GgaINT0035045 @ galGal3
Intron Retention
Gene
ENSGALG00000004642 | NMNAT2
Description
NA
Coordinates
chr8:7860934-7861307:-
Coord C1 exon
chr8:7861240-7861307
Coord A exon
chr8:7861086-7861239
Coord C2 exon
chr8:7860934-7861085
Length
154 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
CTCTTCCCCTGCTCCCCTAGACT
3' ss Score
9.74
Exon sequences
Seq C1 exon
AACAATATCCTGGTGGTGAGGGATGACTCGAACCACCCCATGTCGGTCGTCAGCTCCACCAAAAGCAG
Seq A exon
GTGGGTGATGCTGAGGGTGCCCCCCAGCCAACCCCTCCATTCACGGGGACACCACTGTGTTCCCAGCCCCTGCTCAGGAAGCCCAAATTCCTGGAAAGGGGCCGACCAATCCCCCCACATGGGCTCTGACCCTTCTCTTCCCCTGCTCCCCTAG
Seq C2 exon
ACTGGCCCTGCAGCACGGGGATGGACACGTTGTGGATTACCTCTGCCAGCCTGTCATTGACTACATCCTCAAGAGCCAGCTCTACATCAACGCCTCCGGCTAAGCACCAGAGGCCCTGCAGCAGAACAGCCCTGTCGTCCCATGTCCCTACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004642:ENSGALT00000007394:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0146721=CTP_transf_2=FE(8.3=100)
A:
NA
C2:
PF0146721=CTP_transf_2=PD(0.8=5.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAATATCCTGGTGGTGAGGGA
R:
TGTAGGGACATGGGACGACAG
Band lengths:
219-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]