GgaINT0035045 @ galGal4
Intron Retention
Gene
ENSGALG00000004642 | NMNAT2
Description
nicotinamide nucleotide adenylyltransferase 2 [Source:HGNC Symbol;Acc:HGNC:16789]
Coordinates
chr8:7522441-7522810:-
Coord C1 exon
chr8:7522743-7522810
Coord A exon
chr8:7522589-7522742
Coord C2 exon
chr8:7522441-7522588
Length
154 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
CTCTTCCCCTGCTCCCCTAGACT
3' ss Score
9.74
Exon sequences
Seq C1 exon
AACAATATCCTGGTGGTGAGGGATGACTCGAACCACCCCATGTCGGTCGTCAGCTCCACCAAAAGCAG
Seq A exon
GTGGGTGATGCTGAGGGTGCCCCCCAGCCAACCCCTCCATTCACGGGGACACCACTGTGTTCCCAGCCCCTGCTCAGGAAGCCCAAATTCCTGGAAAGGGGCCGACCAATCCCCCCACATGGGCTCTGACCCTTCTCTTCCCCTGCTCCCCTAG
Seq C2 exon
ACTGGCCCTGCAGCACGGGGATGGACACGTTGTGGATTACCTCTGCCAGCCTGTCATTGACTACATCCTCAAGAGCCAGCTCTACATCAACGCCTCCGGCTAAGCACCAGAGGCCCTGCAGCAGAACAGCCCTGTCGTCCCATGTCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004642:ENSGALT00000007394:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0146721=CTP_transf_2=FE(8.3=100)
A:
NA
C2:
PF0146721=CTP_transf_2=PD(0.8=5.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCTGGTGGTGAGGGATGAC
R:
GGGACATGGGACGACAGGG
Band lengths:
210-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]