MmuINT0109218 @ mm9
Intron Retention
Gene
ENSMUSG00000042751 | Nmnat2
Description
nicotinamide nucleotide adenylyltransferase 2 [Source:MGI Symbol;Acc:MGI:2444155]
Coordinates
chr1:154959510-154966391:+
Coord C1 exon
chr1:154959510-154959577
Coord A exon
chr1:154959578-154962697
Coord C2 exon
chr1:154962698-154966391
Length
3120 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
TGTTGTTTCTTCTTCTACAGGCT
3' ss Score
10.66
Exon sequences
Seq C1 exon
AACAACATCATGGTTGTGAAGGATGATATCAACCATCCCATGTCTGTAGTCAGCTCCACCAAGAGCAG
Seq A exon
GTATGGTCAGCAAATGGTCAGGGACCTTTTGGCTAAGTTTAAAATTTTCCATAGCTTTCCTCAGTCAGTGGCAGCCTGTCATAGTTACGTTTGTATTGCTCTGATAAGACGCCATGACCAAGGCAACTAATAGAGGAAAGCGTTTCCTTGAGCTTCAAGTTTCAGATAAGGAGACCGTCATGGTGGGGGGCTCAGCAGCAGGCAGACAGGCAGGCAGGTAGGCTGCTATAGCAGTTGCTGAGAGCATACATCTTTAGACACAGTCTTAAGGCAGAGAGACCGCAAAGCCCGCCCCAAGTGTCACACCTCCTCCAACAAGGCCACGCCTCCAAATCCTCTCTAAACTATCCCACCAACTGGAGGCCAAGGATTCACACATATGAGCTTAGAGAACAATTCTCACTCAAACCACCACACGACTCTTAGATTCAAGTGGACACTTGTTGCCAGCATTCACTCTTCTCTTTGGACTTCATATATTTATACCTAGATCCTTTTTTGTTTGTTTGTTTTGCTTTGTTTTGTTTTGTTTTCAAGTCAGGGTTTCTCTGTATAGCCTTTGGCTATTGTGGAACTCACTCCAGGCTGGCCTGAAAATCAGAGATACATCTGCCTCTGCCTTCTGAGTGCTGGGATTAAAGGTGTGTACCACCACTGCCCAGTTGTTTACTTTTAATTGAGGGGACAATACATTAACTGGTCTTAGTTGCCTTGAGGGAAGAAGAGGATTTTTTATTTGTAGACTCTTAGTTCCAAGTGCTGGTAAAGCCAGGCTTTATTAGTAAAAGTATAAGGCAGGCCACCATTTTAAAAAGGCCTCAATATTAAGAGTTCTAAATTAGATGTATAGTTCTCATTTACAGAAGTCCAAAGGAATTGAATCTGGTCTCTTTGTTCTGAAGCTTCCATTGTTGGAGACATATCTACTGCCAAGATTGTTCTCATTGGAAAATAACATGGGGAAGCCCAAGACAGGATGTTTTATCTTTAAGGTGACCAATCCAACTACTATGGTACATCTCCACTCAGGAGGTGAAGGCAGGAGGATAACAAGTTCAACGTTAGCCTGGGTTGCATAGCAAGAACCTATCTCAAAAATAAATGGGGGCTGGAGAGATGTCTCTGGGGTTAAGAGCATTGGCTGCTCTCCCAGAAGACCCAGATTTGATTCTTAGCACCCACGTCAATTCACTACCATCAGTAACTACAGTTCCAGGGAATTCAATGCCTTCTTGTCTTCTCAGGCACTGTATACATATGATACACAGATGTATATGGAAGCAAAATACCCATATATATAAGATAAGACTAAAGAAACTTTTAGGTTTAGAGTTGTATATACCATTTTCTTTGTCATCCCACTGGCTCATGGGTAGAGGGAGGCTGGAAAACACAGTTTATTGCTCAGCAACCATATATCTAAATAAAACTAAAAGGGGGAGAAATTAATATTAGAAATTAATATTAGAAACATTTTCCTCTATAAACCCTGAGTGGAAATGTCCTGTGAAATTGTGAGGTAGATAGGACTTAAAGGTTTGGAAGTATAAACTGAGGGCTATGAGCATACATGTCAGGTAAAATGAGATGGCTCAGTAGGTAAAGAGGTCCTTGCTGACAAGCCTAAAGGCCTGAGTTCAATCCCTGGATTATACCTCCTGGAAGGAGAGACCTATGCTTGCACTGGGGAACACACAGTCTCTCATACACACATGCTAATTAATTAATTAACTTTTTAAAAAACCCAGATCTAGATGAATACACTGAGTCAAGCATTGAAGAGAAAGCAGCGATCAAAAGCGTGGCAAACTTACTAGCATTATGTAAAGACCAAGGAACAATCAGAAGCCCCCAGCAGGGATGCCTAGGAGCAAAGGAAGAAGAGTGCCAAGGTGGAGAGCCTTGGCATCTAGTCACAGGGTTCAGAGAAGTCAGTGAACCAAGGACTTAAATCATCTACTGGACTTCTTCCCTTAGAAGACAGTTACAGAGACAATTGCAAGAGCAGCAGTCTCTGGGAGGCTAGGGCAGTGGGCAATGAAGGGGAGAGGGCTTTGACTCCTTAGCCTCCAAGCCATACGGCTATGTCCCATTTGGGACAACCGGACCAGGATTCTCTTGGTTGAGCTCAGATTCTGCTTCTTCTCTGAGTCTGATGAAGTTTGTTTGGAAACCACTTTTCAGAAAGCTTTGTTGTAGAGGGAGACACTTCAGAAAGCACCTTGGAAGGTAAAGGCAGGGCTTGCATTAAAGGCAGAGAGCCAATCACCATGCTGGGCTCCGTGATATCTCCAGACTGTTGTATAAGAAATGAGCAGAGAGCAGAAGGTCAGAGGAAAACAATATGCAGGAATCGATCTGTCCCTGGAATCTTCCACCTGATGCTGTCACGTGGACCCACAGCCAAGTGCTCCCTGTAGGAAAAAGGTGGACTTAAGCCTAAGGATTCTCTAGGAGACCAATTTTCATGAGACCAATGTGCAAAGCAACCCAAAGGGGAAGCCAAAATGTCAGTCCTACACTTGGATAGTGACTCATTTCATCCTTTAAAATAATTGGATGTCACTGGCTTAAATGTTTCCTGAATTGTACCGGAAGACACTCGCAAGAAAAGGGCTTAACTAAGTTGTCCAATGGGCCAATGAAATGGCTCTGTAGGTAAAGAAGCTTGTTCCAGGGCTGGTGACCTGCGTTCAGTCCCCAGGACCCACCTGGGAAAGGACCAAACTGAGTTCCACAAATTGCCCTCTGGTCTCCACACAAATGCTAAGACATACACACACCACAACACACACACACACACACACACACACACACACACACACACGGGAAGTAAATAAGTGTAAAAAATATTTTTTGATGATAATAATAATTTGTGTAAGGTCTCTCACCTACCCAGTGGCAGGCCAGGATGAAAGTGTCATGGGGGAGGTGGGGCTTGGAGGGACAGTGTGCCAGGGGTTGAGGATTCAGCAATACTGTTCACTCAACCCAGGCAAAGGCTGCTGATAGGGCGCTGGGACACACTTGCAGAGCCTTTCCTGAAAGGCAGAGGGCGTCCAGGGCTCTGGTCTCTTTGGGACCTGGATGTCCACTTGATTGTTGTTTCTTCTTCTACAG
Seq C2 exon
GCTGGCCCTGCAGCATGGGGACGGCCATGTTGTGGATTACCTGTCCCAGCCAGTCATCGATTACATCCTCAAGAGTCAGCTGTACATCAACGCCTCGGGCTAGCGGATACCCAGCTCTCTGCTCTATTCTCCCCGTGTCCTCTGCCAACACACTGTCAGACCCCGGTTTCTCTCCTGCCTCTCTGTTTCTCTGTCTTCATCTTGACTGTTCTCCCCACTGGCTGACCTAACCCCCACAGTGTGGAGGGCCTGCGAAGAACCGTGGCGCACCCCATTCCACAGTCATCTTTGGACAAACTTTCCTCTAGTCTCCGGGTTGGGGGTGGGTAAGGGAACAGGGTGGGAGTTGGGGAAAGTGCAGCCCTTGGAGATGTACTGGTGTCCGTATCCCAGCATGCTCTGGGGACATGGCTCAGGCCCTTGCCTTCCCAGCATGCCCTTTACCACAAAGGGCTATTTTTTTTTCTTTTTCTTTGTCCACTTCTTGTAGAACTTGGATGAAATCAGTGTGTGTGTGAGTGTGTTTGTTTGTTTGTAGTCTTGATGCTCTCCTGTGGTTTACTTCCCTTCTGATAGGACACTATAGCCAGTCTCAGCACTCGTAAGTGCGGAGGGCCACATCCAGGAAAGAAGGCAGAGCCTCTCTGCTTTTCCAATACACACACACACACACACACACACACACACACACACACACACACACAGCACACCAGCAGCAGCATCCCCAGACCCCTTTGGTCAAGAGTAAGACTTTCAGGTTCTGAAACCTGGTACATAAGTCTGGGAAGAGTAGGGTTTCTCAGAATTTGAGTCCCTGGTTTCAGATGATCGTGGTCTTGATGCTGTGTGTCTGACCAGTAGCATTGAGTGGGTTCTCTGCCAACCAGGCATTTGCAGAGAGCAAAAACCCTCGGAGGTCATGCTAAGGCATGTTCCTGTTGGTGAGAGGAACCACACAAGGCAAGACTAAGTCCTGATAATCTATTCTTTTTTTTTTTTTTTTGAAAACATGCTAAGAACCCACTTGACTGAAAAGATGCTTTGCTAATTGGCATTATTTATTGCCCATTTGGCTCGGAGCTATAAGTCCAGGATGATCTGGGAGAATGCAGTTTGTTACCCTGAGAATTCATGATCCCCACACACTCCACCTGAGCTTGCCAGGCTGTGCCCAAAGCCCTTTCCTTCTTGCAAAGCAATCAGCCTTGTTTCTGAGCTGGCCCTACCTGTCTCCTGCAGAGCCCAGCAGTCAATGCCCTGGGAGGTCTCCCTGACACACAAGAGCAGTCTCTCCTGTTTCTCCCCATTTCTCCTCGATGTCCTCCCCTTCTCTCTACCTCTGAAGACAGTTCAAGACTGGACAAGATACTCGTGTCCTGCCTGGAGAGCTCGTGGGGAATGATTTTTGTGTTTTGTGTTTGCCTTTCAGCCTCTGGCTCTTGGGTTTCTGGTTGTTCATGGGGAACAGCTCCTGAGTGTCAGGCTACATTTTAATTTCTAACATCAACATGGCCCAGGTGGGACTGGATCAGGGGCGATGCTTTTTGCCTTGGCTTTCCCTCCCACCTTCTCCGCTGACTTCAGGAGGAAGAAGCTGGGTCAACAGAAGCGCATAGGCCATCTCCAGAGCTGTGGCTTTTCTTTAGACTGTAGAAGTGACCTCCAGAGGGAGGAGATTATTTCTATAATCGAGAAGTCCAGTGTTTGACTAAAAGTCATGGAAAAATAGAGAAAACTTGCATGACCCATCTGCTCCCGGGTTCTTATTTGAAAACAAGGGAGCAGAGACCCAGGGAGTCAGTGTCTTGTCCAGGATCACTCAGTGCATCCTGGGAAGTATGATGAGAAGATGCTGCTTCCCTAGACAAAAGAAAACCAGGAGCCTGCGGGGAGACATGGGTGACATGGGCGACATGGGGTTTTGAAGGCTCTAGAGCTGACATGGCTCCACAAGAGCAGACCCCAGCAAGGCTACTTCCATTTTGTTCCTTTGGTTCACTGTGTTTCTGTTCTGAACTCTTGTTGAGCTTCATTCAGTCCATAGCCTGGGATAAGGAACCAGGTTAGCCCAGCAGCCTCAGGGGGCAACAGGCAGCTCAGAACAGGGAAGGAAGGAGAGGTGAGCTAAGAAAAGAATCACACAGAAGAAGTGCATTTCTGGGAAGCAGGTGGGCAGATTGTATCTTGTTAAGGCGTGTTAAAAATGGTTTCCCCTTAACAGAGGTGAGTCCCCATCCGGGTGGGATTGTCCATTCACTTCTCTGTCTCTTTCTCCCGTTGTTGGATCAAGGGTAGGGGACCCCCCCCCGTACCCCCCAACCCTGCCCCTAAGGGGAGCACAATGTGACTGTGACCTGCCGTGGCCAACACCAAAAAGACAGTTTATAAGTGGTGCCTCAGGTGTCATCAGGGTGACTTGGGTCTGTCTTTGGGGACCCATTGTGAGAGCTAGCCTATTACTGGCATGGCACAGAGATGGTAATAAAGACACAAACTGCAGTGATCCCATCATTTACTGCTGCCTGCCATTTTTAATGTCCCCGCCATTTTTTTTAAAGCAGCTGATAGAACAGAGAGGACAAACTTTAATAACCCTCTCCTTAAGGAATGAGGCTGGGCCTCCCTGGATTAATTGTCTGAGCCACACACTCCCCATCCCAGGTAGCCTCTGGGCCCCTGGCTTTCACTTTCCTTGAATGTACATTGGACCAGCAAGGGAAGTCTCTTACTGAAGTGCCTGAATTCACAGCTGAAGTCTTAGAGACACTGGCCTTCCTGTTTTGGCTTGGCTACAAGTTCTAGTCTCCAGTTTCAGGATCTCTAAAAGGATTCATGAACACTCTATTCAAATAAGTGGGAAGTAAAACTTGATAATCAAACTGTATCAAAAGCCAGAGGATTTTAGGGAGCCCCCACCCTCACCCTCATCCCTACCCCCGATGTTCTCATACATGCTTGTAGGGGACTGAGAGAAGCATGTCCATGTATTTGTGTTCCTATTTTTAAAAGTAACGCAACACCAGGTGTGGTGGCACATACCTGTGATCCCAGCACTGAGAGGTGGAGGCAGGAGGACCAGGGGTTCAAGCCCAGCCTCTGGGCACAGAAGACCTTGTCTCAAAACAAAAGCAGCAATGTAAAACCAGGATGGGACAGTCTCAGGACCTCTCCTCGTGTTACAGCAGGAGGGCTACAAAGAGTGGAGGTGGGAAGACTTTATAGCGCATGTAGGTAGGACACCTTGGAGATATCCTATGGTAATGAGGATGGGTGTACTCTGCCACGCTGATCCAACCTGTACTGTCCTGTGAGCTGACTGGTGAATTCCACTCTTGATGTGGTTTCTGTGTAGTGTGCATTTGGAAGTGTCCTAGTAGCCTGTTCTAGTTAGTTAGACTGCAGCCCTTTCCCATCACCTTCAGTGGAGTCCCAGGGCACACAGCTCATCTCGATCCTTGTGGGTTGGAATGGGGAGGAGGAAGCTTTTTTTTTTTTAATTTTTTAAAAAATCATATCTGCTAATTTAAGAGTGAGATTTGCTTTATGGAAGTCAACTCAATAAAAACTGCATTCGAGTTGCAAATACCATTTCACAGTGAAATATTTTTGAGTAGAGTTCTGTTGCTAGGATAGTCGTGGGCAAGAGTTTTATCAGCAAAATGTTTCAATTATGTTAATAAATCAGACAATGCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042751-Nmnat2:NM_175460:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0146721=CTP_transf_2=FE(8.3=100)
A:
NA
C2:
PF0146721=CTP_transf_2=PD(0.8=5.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: