GgaINT0036829 @ galGal3
Intron Retention
Description
NA
Coordinates
chr8:6399282-6399891:+
Coord C1 exon
chr8:6399282-6399495
Coord A exon
chr8:6399496-6399735
Coord C2 exon
chr8:6399736-6399891
Length
240 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
3' ss Seq
CCAACTCCGTGTCATTGCAGTGC
3' ss Score
5.94
Exon sequences
Seq C1 exon
GTGGGAAACAAGCCGGTGGAGTGAGTGCTCCAGGACCTGTGGCGAGGGCTACCAGTACCGCACCGTGCGCTGCTGGAAGATGCTGGCTCCAGGCTTCGACAGCTCTGTTTACGATGACCTCTGCGAGTCGGCTGGGCTGGCCAGGCCCATAGAGAGGAAAGCCTGCAAGAACAAGGCCTGCGGACCCCAGTGGGAGCTCTCGGAGTGGTCTGAG
Seq A exon
GTAGGCATCGGGGGAGCTTTGCATCCAAGGACGAGCTGGGGTCTGAAGGAAAAGGGCAGATGTTGGGTGCTTCCCTGTGGTGAGCGCTGAGGAAGCCCTGCCCAACTGCACACTCACCTTTACTCACTTTCTTCCTTCCTTGCTGGGGCCCTTCCTCTCACCACCAGTGCAGCAGGAAGAAAACACCTTTGCTTGTTCCTCTTCTGCTCTGCTTTGGAGTCCAACTCCGTGTCATTGCAG
Seq C2 exon
TGCTCGGCCCGATGTGGCACCCAGGGGACGATGAAGAGGGAGGTGCGCTGCTCGGTGGAGGCAGCCCTCTGCGATGAGTCCCAGAAGCCCAGCAGTGAGAAGGACTGCACAGGACCGCCCTGCGACCGCCGCTGGACCGCCTCAGACTGGGGCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004032:ENSGALT00000006421:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=WD(100=83.3),PF0009014=TSP_1=PU(14.3=9.7)
A:
NA
C2:
PF0009014=TSP_1=PD(81.6=76.9),PF0009014=TSP_1=PU(13.0=13.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGAGTGCTCCAGGACCT
R:
CTTCTCACTGCTGGGCTTCTG
Band lengths:
298-538
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]