GgaINT0037458 @ galGal3
Intron Retention
Gene
ENSGALG00000003429 | F1NQJ4_CHICK
Description
NA
Coordinates
chr8:5425212-5433087:-
Coord C1 exon
chr8:5432928-5433087
Coord A exon
chr8:5425325-5432927
Coord C2 exon
chr8:5425212-5425324
Length
7603 bp
Sequences
Splice sites
5' ss Seq
CTGGTTAGT
5' ss Score
6.32
3' ss Seq
CCTCACTCTTTCCTTTCCAGGTT
3' ss Score
12.04
Exon sequences
Seq C1 exon
GTATCAAACTGGTTTGGAAATAAGAGAATCCGGTACAAGAAGAACATAGGTAAATTTCAAGAGGAAGCCAATATTTATGCTGCCAAAACGGCTGTCACGGCTACCAATGTGTCAGCCCATGGAAGCCAGGCTAACTCACCCTCAACTCCCAATTCAGCTG
Seq A exon
GTTAGTTTTGTTTTATTTTTATTTTGGGTTGTTAATGTTTGGTTTTCTGTTTGTTTGCCTCCCTCCCTCTAATCTCTCTCTCGTTTTCTCCTTTGGGTTATTTCAGTTTTTCTTTTCTGGTTTTGGTTGGCTCACTTTTGTGGTCTTGAAAAGGAAAAAGAGAGATGGGTTTGGTTTTTGGGGTTGTTTTGGGGGATGCGGGGGGATTTGTTTAAGCTTTTTACTTGGTTCGTCTTCTCTGTTCTGGTTCTCATTTGAAAAGCAATGTGATCAGACCGTGTGAGTGATGGTGATGTGTTGGGTTGTGTGAACAGACACAAAAGCAGAAAAATGACCAGAAAAAAAAAAAAACAAACCAAAATAAAACCACTGGGATTGTTAACTCTTTGGGAAGAGGGGGAAAAAAAGGAGAAAAAAAAATCCTTGTTCCAATTGTTGCATTTCACTGGGGGCAGAAAGCATGAGTGGCCCTCCTTAATAAAGCCCAACGTTTCTGGGATGTCTGAACTCGTTGCTGTTTGGGGGTTGTTTGGGGCAGATTTCTGTCTGTTGCTTTTCTTTCTGTTGTGGTTACCTTTGATTGCATACATGATGATGTGTGGATCACCTGCAAGAGTGTGCTCTGTGTGAATTTTATTTTCCCTTTGTGTCAGGATGACCCAGGGAGACCTGTGGGTCACTTCGTTCCCTTCCCGTTCCCCCTTTCCTGCCCGTTTGCTGTGGTTTCCATCTGTTTGTTTTGAGGGTCAAAGGCACAGAGCGCTTTGCCCGGATTTCAACTCCTCTGCTAGAGAACGATGCTCACTTCATCTGTAGTGGCTGACTCCAAAACGATGCCAGGCTGTGGTTGGCATGCTCTGTTCTGGTTATGCCCAGCTCCTAGGAGCGATGGAGAACTGGGACCTGATGAAAAGGAACAAAAAAAAAAGGCAATTTTGTGTGTGCCACACACTCATCCAGACAAATATCCACGTGCCTCTTTTCTTTGTAGGGGTGGGAGGGTGTTGGGCAGCCCACCACTCACGCTCCATACAGATGCTGGTTGCTGCTGGGACGTGTGCTCACATAGCAAATGCAGTATCTGCTCAGTGAGAGGTGTCAGGGGAATCACACCCCCAGATCTGGAGGTCTGAGGAGGCAGAGAAAGCAGAGCCCAGACAAAAGGAAAACAAGCAGTGTGTTTTCTTTCTTTCTTTTTTTTTTTTTCCATCCTTTTCCTTCCATTGCTGTAACCGCAGACGATTTAAATGCAGTTTGAAAAATGTCATCCTTACTACCTGCTCAAATGGCAAAGGCCCGGCTGTAGGAAGGCCTGGAGGACAGAGAGCAGAACTGCGTGTGCTGGGAGGATGGTTACCTGCTGGATGTGGTGCTGCTCTGCACACGCAGCTTGGGCCCACGAGCCACAGCTCTCCTCCTCTTCTGCCTTTTTCAACTGGAGTCAGACCCGAAGGTGTGAAAGGGCAAGGGAGGAGCTTCAGATGACTCAAATAGGTTTGGAAATGGCTCATGGATATAGGCATTTCCCCAGTGCCTGCCCTGTTAAATAGTGCTCCAGCGTGAGTCTGTTTCTTTGACGTCCCCACAGGCAGTAACATGGCTGTTTCAGTGATAGATTGGCCGGTACCCTGCAGTAAACGGCTGAGATATTCCCTGGATAACACTGTGCTTTCAAGGAAGGACAAACAGTCTCATTATTAACATGTAAGAATGAGCTCCTGGGTCCTCTTTCTTGCTCCCTTGTCCACTCCCCGTGAACACCAGCCCCTTTTCCTGTGCTGAGGCAGTGCTAAAGCAGCTCGTCGATGCACACGAGCTCCTGCACCTTGAAGGTCCTTGCTGTGCTGGAAGCAAAGTGTTTGTGAGCTGACCGTTCTTGTATGCTGCAGCAGTGGCAGTGCAGGGAGACCCAACAGCCCAATCCCTAGGGAAGCTTGCAGAGAAAGTGGGATTGAATGTCCTTATATCCTCTCTTGAGAAGACAGCTGGAAGGGCCTTGGGACTTTATCTCCAGCAGTGGCACCCCAGGTTGAGATCTCCCCTGCTCAGCCCTATACTGTCATGTTGTAGGGCAAAGGTGTGTCCCAGTGGCACCTGAAGTCACATGATCTTCCCTTCTTCAGGTTGTGCTGTAGGTGCTGACAGCCAAAAGCACACCTGTGCATGCTTTGCCTGAAATACCTATTAAAGACTTGGAGGATGGTGTCAAGGGCTGTGAGCCATCCGGATGTGCTGCACTGCCGTGGGAGGGCATGAAGAGGCGAAGGACTAAGGTGGATGATCTCTCTCCTTAAATACCACGGTCTTTTTTCTGTTTACAGATCATTGGCAGGGACTTTGGTGAGGAAGGAGCCTGAACAAAGACTAGATTTGCTGGCAATTTGTAGGGTCCTCTGGTTTAAATACATGACAGGGCACATGGAAAGAAGGGGAACAGACAGAGGACAGGTCATGAGAAGGAGGCAACCAGCAATGTAGTCCCTGGAGGGACATGATGTTGGAAGAGGAGGTGGAACTGGATGTGTTGGGACCTGGGACAGGAGCTAAATTCATTTCTGCTGTGGTTGCGCAGACCCATCTGTTCTCTGCATTGACAGCCATGTTACCGGAGCTCAATGAATGGCTACAGTCAGTCAAAGAGATTGGCCACACATTGACAAGGGCAAGGACTGCATCTGGCTGGCCATCTGGCACCTTCAGCACAGGGTCCCCCACCCTCAGTCACCCAGGCCTGAATGTCAAACACCTTTTCATCCTGAATACACGCAGTTGGGTTTTATCAGCCAGATGTTCAAATAAGCTGAGATGTCTGGCTCATTTGGGCTAACAACTCCCCATCCTCACTTTGATTGTATGGACAATCTCAGCACAAAAACCATGTGGTAAATGAGAGCTATTTTATGTGGACTGACCCTTTTGCCAACCGGAGTCCTGGAGGACTGCACATAGGTGATGACATCCAGTGAAATCTTCCATGCAGAGCAGCCAAAATTATCCTGAACTTTTTTTTTTTACTTTTTTTTTTTTTACCAGCTCATCCTTTTGTTTTGTAAAAATCTTCATGCGCAGCTGCTGATGGACAGGATCTGGAAACGTGCTTCATCACGCACCAGCCCGATGGCTGTATCTTCTCTGCCTTCCCTCATTTGTTTGTGACAGTTGCTTTTTGTGGGATGCCAGAGTGAGCGAAGAAACCGTGCTCGTCATGGTCTCACTGTGTTCAGTGTCGCTTGGCAAGCAAAAAAGAACAGCAGGTGTCCTGCAGGACCAGCCCAGGCTTATGTTTGCTTTTAGACCGTGTGTCAGATTAAGGGACTTTGTCCATCTGAGCTGCTGCGTGGTCCATCATCTTCTTCCCTTATCTTTGGCCGTGGTAGAAACACAAGGAAAAGTTACATGAAATTAAGCATTTTTGGTGCATGTAGGTCACTGCCATTGACTTCAACTAGGAGTCCCATGTGCACAACCAAAGTTGATTTCAGTGGTTCGAGGTACTGGATATGTCTCATTGGTGGTAGGTAGTAGGAATAAGCAGCATATAAATGTGAGAAGTGGAAGACATCTCACTGTTGACATTGCTTTGATATAGGCTTCAGACCCAGTGTCAAGATTCTGAGTGCCAAAGCTCGTTTCCTTTTAAGCATTGCCACCACTTTTTCTGAAGCTGGTGTTCTGATGGGAACTCACCACTAAGGAATGATGGTGATTAGACTTGAGTTTGATAAGATGTGTGGATGCTGAAGACGGACCGCTGTTTCACACTACCACGAATGTTTCTTTCTGTTTTCTTCTGTCTGCGCATGGAAGCGTCAAGGGACTCACATGTGCCAAGTTCAGAGACCTTTCATTGTGGGTGCACAAGCTTAAAGGTGGTTATTGCATTTCGCTTCTCAAGGAGCTCTGTGTCAAACTACGACCGCTGTGGTGTGTTTCCAATGGAGCCTTTCAGAGGGACAGATCAGATTAAGGATGGAGCCTGCTCCAGCAGACAGATATGACTTGTTTCTGTGAAGGATACCAGTGTCTTAATTTTGAGGACTCTTTGCATTCCTTCCCCCCTCTTCCACCCCAGCGCATCAGTCCCTCGTAGGTGCGTCTNNNNNNNNNNCATCACGCACCAGCCCGATGGCTGTATCTTCTCTGCCTTCCCTCATTTGTTTGTGACAGTTGCTTTTTGTGGGATGCCAGAGTGAGCGAAGAAACCGTGCTCGTCATGGTCTCACTGTGTTCAGTGTCGCTTGGCAAGCAAAAAAGAACAGCAGGTGTCCTGCAGGACCAGCCCAGGCTTATGTTTGCTTTTAGACCGTGTGTCAGATTAAGGGACTTTGTCCATTTGAGCTGCTGCGTGGTCCATCATCTTCTTCCCTTATCTTTGGCCATGGTAGAAACACAAGGAAAAGTTACATGAAATTAAGCATTTTTGGTGCATGTAGGTCACTGCCATTGACTTCAATTAGGAGTCCCATGTGCACAACCAAAGTTGATTTCAGTGGTTCAAGGTACTGGATATGTCTCATTGGTGGTAGGTAGTAGGAATAAGCAGCATATAAATGTGAGAAGTGGAAGACATCTCACTGTTGACATTGCTTTGAGGTAGGCTTTCACCCAGTGTCAAGATTCTGAGTGCCAAAGCTCGTTTCCTTTTAAGCATTGCCACCACTTTTTCTGAAGCTGGTGTTCTGATGGGAACTCACCACTAAGGAATGATGGTGATTAGACTTGAGTTTGATAAGATGTGTGGATGCTGAAGACGGACCGCTGTTTCACACTACCACGAATGTTTCTTTCTGTTTTCTTCTGTCTGCGCATGGAAGCGTCAAGGGACTCACATGTGCCAAGTTCAGAGACCTTTCATTGTGGGTGCACAAGCTCAAAGGTGGTTATTGCATTTCGCTTCTCAAGGAGCTCTGTGTCAAACTACGACCGCTGTGGTGTGTTTCCAATGGAGCCTTTCAGAGGGACAGATCAGATTAAGGATGGAGCCTTCTCCAGCAGACAGATATGACTTGTTTCTGTGAAGGATACCAGTGTCTTAATTTTGAGGACTCTTTGCATTCCTTCCCCCCTCTTCCACCCCAGCGCATCAGTCCCTCGTAGCTGCGTCTCTGAGGCTTTGGGCCATTGTAATTTTCATACATGGCTAGCACATAGGCAGCAGAGTGCTGAAACAGCAGAGTAGCAGCTCAAAGGGCTCTCTGCAATTACGGCTCTGATACAAATGCATCCATACATGCGGGCCATTGGTATGCGCATATTTATCTTTGCATCCACATCGGCAGCAAGACATATTTACCGTTTAGATATGCACATATATTGTAAAAATACCCTGTGCCGATAGCAGTGTATATCTTGTAAGTGACATCTCCACTGCTCCTCATGGTTTCCAAGACACCGGTGCTCTTCAGAACTAGAGTTTGTGATTGTTTATTTCTTCCCTCCCAGTCTCAGTTTTAAGGGGCAGGTTTGTTAAATTTCCATAAAGACCAGATACGTTTATGGTATTTTTATTTGTTATTATTATTACTATTATTATTATCTTGTTTTGGTAGGGGAAGGTGGAATGAAATGTTGCTCTGCTTGGGGGTAGAGTGATGGTGGAGTCCTGTCAGGTGCTCAGGGCTTCCCAAGTCCTCTTTCCAGCTTTGACACTGATTGCTTGTGTCGTCTCAAAGGGTTCTGCTCACCTTAATGTAATTGCAGAATATTCCCTGCTTCTTGTGAGGGTTAACTGCAAAGTCCTTTGGTTCCCAGCCACTGTAGGAACACAAAAGCCGTCACACTGCTCTGGGCTTTATGCTGGTAGTCAAAGTGATCATTCAGAAAAGCCGGTAGGAAGCAGTTTTTTTGTATGTGAAAAGTGTCCATCTTGACGCTTTAGGTTGAGCAGTGTCAGTGGGGGATATCCTCAGTCTGCCAGTTGATAGCCATAGCTTTTTGCCTTTAGAGCCTGAGAGGTGGGGATGCCACAGGAGCCAGGTACCAGCTGAGCAGGGAGGTGCTGGCTGCAGCCCTGCCACCTAGTGCTGCTTACTTCACATGGCATTGATGGGTTGCTCTGCCAAGCGCGCTCCTGATAAAAGGGCCATTTGCAAAGAGTAAGGTTTTGCAGTAGGGTGTCGTGAACGTGAACTCTCCAACTTAGACCTCCTACTTGTAGACTTGCTCCCTGTGCCTTCTTGATGTTGGCTTCCATCCGGATCCTTCCTGGCTCATCTCCAGGGCAGAGCCTGGGGACTGCACAGAGGGTTTCTCCCCTCTCCTCTCCAGCAGGAGATGGGAATTGTTGGACGTTTCTCAGAGCACACGCATGAGCCATAGTTGGGCAATTCCACCAGGACTGTGGTTGCCAATCTTCTAAGCTGGAAGCAGCAGCAGAGATGATGAGAGCGTATTTTGGGTTGGAGCTGAAAGCAGAGCTGACCTGGGCCCCTGAAGTCTCTCCTTTCCAAGGCTAACGTCATGTATATAACCAAACCTTGCACGTTGAGCTGTCTCACACTTAACGCGCTGATCTGCACGATGAGTTCTGAAATAATCCCATAAAACCTTTTTATTTATTTTTAACCCCCTTCCCTCCTCCCCTGCCTTCCAGTTACATGATAGGTTTGTTTCTCCTCTTTGGTAGTCGAGGAGGTGCTCAGATATCTCAGAGCTGGAAGTGGGACCTTTTTTATTTTTCCTTATCATCTGTTGGTTGTTTTTTTTCTCCTGATCCCACCCAGTTGCCCTCACCGTTATCGTTTTTTATCACAATGCTGGCGACTAGTGCATGCAGTGGGGATTTGCTTACAGAGCTCTGGGGCAGCTGGCCCCATGGGGCTGAGACACCCACGTCCTCTCACAGCCTGCTGTGCTGAAAGAAGGTTGCCAACAAGATCAGTTAATGGGAGCCTGGCCCAGGTGCCCTCGCATTTTTGTGAACCTTTGCTCCTGGTGCATTGTGCTTCCCCCAGGGATGGATCCTGATGTCCTGAAGGCAAACCCATGCACCTCTCCCTCAAGGGAGCTCTGGGTATGGAAAGGGATGGTGCTTGGATGTGGTCACCCGGCAGAAGGGCCCCATAAGGCTGTATGGCCCAGACTTACCCACGCTGAGCTGAGCTTCTCAGAGACAACAGCAGCATGGGCCTGGTTAGCTGTGCTGAAGTGACTTCTGCTTTTGGTAGTGAGGCGTCTTTGGATAATTCTCTTCTCCGGTGCAATCTGCCGGGTAGACATCTCCAAAAATCGAGATCTGCAAAGCTGCCTGAAGGATTTTGATGCCCTGAAATGAAGGGAAAGAAAGGGCTGTCTGAGTCCTCCAGGCCGGGTTTTGTTTATCTCAGTCCAGAGCATGAAGAATCCTTCCTCCAGCTGAGGAGCTGTTGAAGAATGTTCTTGGCAATGAGCTGTAACAACATGTGGCTTTGAATAACCTCAAGAGTGCATCCCTTTTTTTTTTTTTTTTTTTTTTTTTTGCTTGCTCTGTTCTTCATACTACTAACCTGATTGTGTGTTTTGTTTTTGTGGTTGCTTTGCATGTTGTTCCTTCCTCTTGGCTGAGAGTCATGGGGTGGATCTTTTTCCTTTCTGTGATTCAGGTGCCTCACTCTTTCCTTTCCAG
Seq C2 exon
GTTCTTCCAGTTCTTTTAACATGTCAAACTCTGGAGATTTGTTCATGAGCGTGCAGTCTCTCAATGGGGATTCTTACCAAGGGGCCCAGGTTGGAGCCAACGTGCAGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003429:ENSGALT00000021887:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=NA C2=0.500
Domain overlap (PFAM):
C1:
PF0044324=UCH=PD(16.6=72.2),PF0004624=Homeobox=PD(21.7=24.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]