GgaINT0037607 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C4W1]
Coordinates
chr8:25588429-25589977:-
Coord C1 exon
chr8:25589817-25589977
Coord A exon
chr8:25588606-25589816
Coord C2 exon
chr8:25588429-25588605
Length
1211 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAG
5' ss Score
8.68
3' ss Seq
TTCTCTTTTTCTTTCCAAAGCTG
3' ss Score
9.04
Exon sequences
Seq C1 exon
GAAATCCTTTCAACCCTCACCTTAAAATCAACAATGCTGTTTCAAACGTCATCTGCTCCATCACCTTTGGCAATAGGTTTGAGTACCATGATGAGGACTTCCAAAACTTGCTGCGGCTGATGGATGAGACTGTTACCCTCCATGGGAAGATAATGAGCCAG
Seq A exon
GTACAGCCCTTGTGCCCCCAGCACGGACAGTGTGTAGATTTGAAAGGCTATTGTTTCTTCTCTGGAGTCCACAGCAAAACCTCAAGCACTTTCTTAGATTCAGAGAATCTCTCAAGTTAGTAAAGATAAACAAGGGCCCTCAAGTCCAGTTCCTGGCTCCACGCAGGAGCTGAAATCTGAACCCTATTTCTGAGAGCACTGCCCAAGCAAAGCCTCAGCTCCTGCAGCTCAGAGCAATGCCCACTGCCCTGGAGAGCTGTCCCATGCCCACTGCCCTCTGGGGCAGTGCCTTTCTATAACTGATAACCTGATCCTCCCCTGACACAGCTCTATGCCATTCACTCTGGCCCTGTTGCTATCACCAGAGAGCAGAGGTTACCACTGCTCCTCTACTTCCTGTGAGGAGCTGCAGGCTGCCATGATGAGCTGGGGGCCACCGTGAGGCCTCCCCTCAGTCTTCTCTGGTTAACAAAACAACAGACCTTGGCACTCCTCATACATTTGCCTTGAAGACCCTTCTCCATCTTCATAGCACGCCTTTAGAGCTGTCTCATAGTTTTATATCTTTATATATTGCTGCACCCAAAACTGCACACACTGCTCAAGGTGAGGCCATCACTAACCGTAGAGGGCTGGCCAAGCCCAGGAGATGTTTCCCTCTGCTCCGGGGGCACGAGATTTTCCTTGCTGCTTCCCACAGCTGTGTGGCCCTGTCTACCCCATGAGGCATCTTGGTGAAGATGCAGCCCTCACTAACATCAAAGCATATCTATCTCATGTAGTTTTCCAGTGCTTTGGGAAGGAACTGAACGTAGTAGAGATTTTGGGCAGGTCTCTAGGAGAGGTTATGGGAAGGAGCAGTGCTAAGGTTGCCATGGACATCTGTTGCCATTTGTCATACCATTGCACAACGTCCATCTTCATCTGATTTCTTTCTACTGTATTTTCAAGCTGTGCAATGCTCACATTGCTCTCTTTCACTCAATGTCACCACATCCACTGAGTGCCAGGCTCCCTGCTGTGACTCTGCAGAATGCACTAGTCTCTTTCACCATGGAGATATCAATCTTTTGACATGCTCTTCTGGAGATGAGTTAATTCCATCTACTCCAGCAGTGTAGCATTGTGGCTTTGCAGGCTTTTCAAGTTTTGAAAACATAAGGGGTTTTCAGTCCTTTATTGAATTTGCTCTTCTCTTTTTCTTTCCAAAG
Seq C2 exon
CTGTACACATTTTTCCCCTCCATAGTAAAGTACCTCCCTGGATCCCACCAAACAGTTATCAAAAATGGGAAGCTCATGAAAGATTTTGTGTGCAATGTGATCAGCAAACATAAGGAAGATCTGAACCCCTCAGAGAGCCGGGACTTCATCGACAGCTACCTGCAGGAGATGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000018634:ENSGALT00000017753:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.7=100)
A:
NA
C2:
PF0006717=p450=FE(12.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAATCCTTTCAACCCTCACCT
R:
TTGGCCATCTCCTGCAGGTAG
Band lengths:
337-1548
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]