GgaINT0037609 @ galGal3
Intron Retention
Gene
ENSGALG00000018634 | E1C4W1_CHICK
Description
NA
Coordinates
chr8:27464844-27465622:-
Coord C1 exon
chr8:27465490-27465622
Coord A exon
chr8:27465032-27465489
Coord C2 exon
chr8:27464844-27465031
Length
458 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAA
5' ss Score
6.82
3' ss Seq
TCCCTGTTCTTTCCAAACAGCCC
3' ss Score
11.13
Exon sequences
Seq C1 exon
CCCGACAGCAGTGATTTCTGTGAGGATAACCTGGTGTCGTGCACTCTTGACCTGTTTTTTGCTGGGACTGAGACCACCTCTACAACCATTCGCTGGGCCCTGCTGTTTATGGCCATGTATCCAGAAATTCAAG
Seq A exon
GTACAAGTAGCAGCAGGGCTGTGTGCTTCCTGGGTTTTATCCCTTGCAACATGGTCTGAATCTTTCTTTCTTGAAAGAAAAAAAAAAAGGAATTTTTCTGCTCTGAAACTCATGTAGTGCTAATATTGTCTTTTGTATTCAAGTGTTTGCCCTTGGTGTTTTAAAACTTGGCCTGGTAATTTTGTAATGCTTTACTTAAAGACAAAGAGACAAAGGTGGCAACGTACCTAACAAGCACTGGAGATCCCTGAGGGAATTGAAGCAGAAGCAACACAGGCTCTGCACTGGGCCCATTTAGTAGCTGAAGTGATGAGCACAGAGAGAGGTGCCATGAGTACCCTAGTAACACAATTGACCTGCGATGGTACTTGTGAACTCACACAGCAAAACCTTCATTGGTTCTCAAGAAGATATATGGCTTTGCTGCACTGTAGCTGATCCCTGTTCTTTCCAAACAG
Seq C2 exon
CCCGTGTGCAAGCTGAGATCGATGCTGTCATTGGGCAGGCCCGGCAGCCGTCCCTGGAGGACAGGAACAACATGCCCTACACCAATGCCGTCATCCATGAAGTGCAGAGGAAAGGCAACATCATCCCTTTCAATGCATTGAGACTGACAGTGAAAGACACAGTCTTGGCTGGTTTCCGGGTATCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000018634:ENSGALT00000017753:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.016
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(9.7=100)
A:
NA
C2:
PF0006717=p450=FE(13.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGACAGCAGTGATTTCTGT
R:
CTTGGATACCCGGAAACCAGC
Band lengths:
321-779
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]