GgaINT0038230 @ galGal3
Intron Retention
Gene
ENSGALG00000002451 | KCNT2
Description
NA
Coordinates
chr8:2775924-2780944:+
Coord C1 exon
chr8:2775924-2776060
Coord A exon
chr8:2776061-2780880
Coord C2 exon
chr8:2780881-2780944
Length
4820 bp
Sequences
Splice sites
5' ss Seq
AAAGTAGGC
5' ss Score
5
3' ss Seq
TTTCTCCCTCATTTTTCTAGAAT
3' ss Score
9.89
Exon sequences
Seq C1 exon
GACTATTATGTTGTTATTTTGTGTCCTACTGAAATGGATGCTCAGGTCCGGAGAGTGTTACAAATCCCGATGTGGTCTCAAAGAGTTATCTATCTCCAAGGCTCAGCACTAAAAGATCAAGACCTGTTGAGAGCAAA
Seq A exon
GTAGGCAAATACAGCTAACACTTATTTTCTACCTTGTTTCACATATACTCTGATAAAGTAGTTCAACAAAAAACAAAAGCTAGAAGGAAAGTATGTTTATTTAGAAAACAGGGATCTTTATTATATTTGTTTTTTCCTTAAGTCTGAAAATTTTCGAGGAATATTTGTAAGCTCTTCATTTGACCATTTTTTTATCATTATTTTTTCTTTCTTTTTTAAAGGTGTTGAAACAGTGTGCCTGTAATTTCTCTAGAAAAAGCTGTGTTGAAAATTCCGAAACTGCCAATAATGCTAGAATTTGTTTTTGTTATTTATGCACAGATAGTAAGCCAAGTGAAGGGGAGAAAAAGTGAACAAAATTATTACCCTTTGAATGCTCTGTACAGTTTTGTTTTCTTAAGTTCAGCCTGGTATCATAAGCAACGACTCTACTTTATGTCTATATACTCTTCCTTCAGGATCTTGCTCTTAGCACACATTTTCTACCACTTCTAAAAAAAGCCTCTTCGCCAGTTAATATTGAATGACAGTAATCAAAACATATCAGTCAAACACAGTTTCTCAAAAAAAAAAAAAAAAAGATAAAAAAACAACCAAAAAACTCACAAAGACTACCAAAACCAACCACCATTGCTCAATCACTTTAAAGGTGGGAAAGAACTCACAGTGGAATTTGTGTAGGAGGATTGTCTCTTCAAACTCCAAAGAGAAAGGTGATTCTTTTCAAATAACTATTTTAATTTATCTGCACTGCTTTTTATAAGAACTTAACTGTCTTCGCTTAAATTAATCAAGTAATACAGATATCTGAGATCAAGCCAGTATGTGAGTACTTGTGTCATTCAGCCTTCTAAAGAATTATTCTGAAGAATCTCATCTGTGAGAAGTCTAGCAAGCAGCACAATCTTTAAATTTCTGCTACTGAAAAGAATAGCTACCTTTACATAGCTACCTTACTTGAAAATGCAGATCTTTGTTCAGGATTATGAACTTCTTTCAAAAAGTGATTCCTTGTTTTTCACTTTGTTGTTCATTTTCAAGGAGGAATTCATAGGGGAATTTGGCTAACATTTGTTCTACACATTAAGAGAAATTAGACTGTACCCTGCAGATAATAATGAATTTCATTTATAATAACCTGGAGGTACCCAATGAAGTTTTTTCCTGCAGAACATGTAATTGAATGTACCTGTCACAGAATAATTTTCCACCTCTCCTGAGGGAAAAAGCACAGTAGGAACTTAACAGCGTGTTTAATCTGATCCATAAACCAGTACTTCAGATGTTTGCTATATTCCTTTTAATAAGAATATAGTGTACTGAGAAGATAGCAAGACACATGGTAAACAATTTCTAATGAATAAAATCATAGAATGGTTTGGGTCGGAAGGGACCTTGAAGATCATCTAGTCCCAACCCCCTGCTATAGGCAGGGACACCACCCCACTAGACCATGTTGCTCACAGCCCCCTGCAGCCTGGCCTTTAATGCCTCCAGGGAGGGGGTATCCACCTCTCTGGGCAACCTGTTCCAGTGTCTGACCACCCTCACAGTAAAGAATTTTTTCCTAATATCTAGTCTACATCTGCCCTCTTCCAGATTAAAACCATTTCCCCTCATTCTGTTGCTACCTGCCCTTATAAAATGTCTCTCCCCCCCAAAATAATGCTTAACACACACACGCACACACACACAAAATTAAAAAAAAAAAAAATCAAGAAGTGTCTTTCTGTTTATCAAAATTTATACATATATTATACATGAAATGCAATGCCAAAATATCACGATAAAGGTCACACCACAAAAGAAAGGGAATACCAAAAAATTATGTACTGCATATTTAGTAAATAGTTAACTGAGAACTGTATTTTCCTGTATCCTAGTACACCATTTGACTACAAAAATGATACTCATTCTTGCTTTCTACCTTTGAAAGTTTCATGTTGCAATTTTTTGTTGTTCTCTGGAAAAACAAGAACAAACAGTCTGTCACGTGGTTTAACACCACTGCTACTTCTAGTGGGCATCAGTACAATTAGAACTTTTATATCTACACAGTAACTGAAAAAAACAGCCCTTGTTCTTCATGCAGACTACTGCTAGAAAGTAACTTTATATTTCCTTGCTCTACAGCTTTCTCCCATGCTGTCAAAAAAAATAGTTTTTCTCTTCTTACACTTTTCCACTTCAGTGAACCCAGCACACATCTTAATTTTCCTCTTATCCACTCTTTACTTTATACTTCTTTTTTATTATTATTTTCACAAATTTATTTCATTATATCAAGTCGCTTCAAATTCTGCCATTCGCAAGCAGTAGAACAATTTTATTTTTCACATTTTATGGCATATAAAAATTGACAAAGCTTTTCTTGTTGTCAGAACATTAATAGAATTGTCCTCTTATAAGGATATTCTGGGTTCTAATATATATGTTTAGCATAGATATTGTTAGTGTTTCTGTTGTCTAAATTCATGGTGTCTATTGAAAGTATCAGGGGAGTTATCCTTGCTAACTGTGGCTGAAGTGATTCAAGAAGCTTCAAGAAGCTTCTAAAAAGCATTGGAAAAAAAGGTGAATATGATCAGTGAGGTTTCATTTCCTCACAAAATCATCTGTATATACTACTGACCCTAGTTATCATCTCTCATCAAATGCTGTTCCATCACTAATTTCACTGAATTTTATTTCCTATTTTTTTGTTGATTTTTTTTTTTTTAAAGACCTTACTACTTCTGCTCTCATGCTTATCTGAAACTATTCATATAGATCCCATGACTTTTTCTTAATCAGTGCTTAGAATTGCCCATTCTCACTTCTCTGTATTGGTTGCACTTGACATTATTATTTCAGAAATGCACGGTTGCTTTTGTCACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCATTTCAAGTACTTCAGTCTGAGGCTTCTCCTGTTTTCCCACGCTGCCTACGGAACAACCTATAATTATCTTATCCTTCTTTTTAATTTATATTTTCTCTGAATGACCACGCACAAAACACACAAATTCAATTACTATTTCCATAGTCATAAACTAAAAGGTTATTACTTAGTTTATCTGGCTTCTTAAGATGGATATCTATCTATCAACTTTAGTTGCAGGTTGTTAAAAATAGATCTTAAGTTTTGCTGCTCAAATAAAACCAGTAAAATATTATAGATCATATGTTTGGAATCATCTTATGGAGCATCATATGTAGACTGAACTCAAACATTGCTAGTGTTTTCTTACACAATCTCTTATTTTTACCTCATTAAAACAATGCTTAGGTTTTTAATATACATCATCTCAATTCCTTCTGAACACTTTGGAAATATTATGTGCATAGTCCATCACTTCATCTCTTATCGCAGTCCTTCTCTGGCTTACCCTTCTTTCTCATCAAGAAATGACCTTTTATTCTCACTTAGACTACAACTCCTAGTCCTTAGTGAGACAAAACCTGACAAGCCTATAATACTGTTCTCTCACACATATAACAGATTAGCATACAAATCCCCTTGTGACTTCACCTATACTGTACCTTCAAGCTAGAATGAATTTCACAGAAACATCTATAAATTCATGTTGGTATTCCCCATTATATTCTCTCTTCAGTCTGTTCCCTGCTGATATCTAATGAGATCACTTTCTATCTTTTTTTTTGTTTTGTTTTCTTTGTTTTTTGTATTAATGTACACTCACAGTTTGTTTCCCATTTCTGCATATACTTTTCTAGTCCTTTGCTACATCATTTAGAGATTAATATAACACGCGCTGTCTTTTTGCCCTGTTTATACAGTACCTAAAATAAAGGGTTCTCAACATCAGCCTATGGTTCCAGTGACCAAAATTATTGCTAACAACCACCACTTTCATTTTCTAGCAGTAGAGAAATCAAAGATTCTGAGTTCCCATTCCTTATTCCAGAATGGAGTTGCCATAACAAGCAGGGAACTGTCTGCTCATTTTTCCCAGTTTATGTCTCATTTTTCCTCTTTCCAGGAAACCCTTTCTGGTCATCCTCATTATTTTTGCCTAGAAACTCCTGTCTTCCCAAGCAGGTCAGCCAAGTCCCCATTTCTTTGCTTCTCTGCACGAGTAGGTGAAATAGGTCTCACAGGAGGAGAATATTAAGATTTGAGGCAAGAGTGGAAAAGCAAGCTTTCAAGAGACCTCCAGTCAGAGTTTTTCCTCCCCACTGCTCCACCACCACCATTTTATTAACATGTCCAGTTGTAACCACTAGAGAACAATTAAGAATTAAAAGTTCACAATGAGATTACAGACAGAAAATAGTTGATTCATTTAATGCATACATATAGAAATGTCCCTAATGCATTATTCTACTACATTCACTCGCCTTTTTTCTAGTGCTAGGCAAGGCAATTCTATATTATCTGCACTCTCTCATTCCTTCTTACTAGTAATAACATACATATTGTACTGTACACCTACACAGTAGGCAAACTGCTGCTATTAATTCACCTTTTTTATACTTGTGGCTGATAAATACTTAATTTGCAAACTAATTGTGCTTGAGACCACCTTGCTTCTATTACTTCGGCATGGCTTCTATTGGAACCAAGGGAAGAAAATTTCCTAGAACCTAGCCGAGAAGTACTGGTACACTGCGAGCAAGTACACAGAGGAGTGTTGTTGACATTCATATAACACATGAAAGCAGATAGGCTCTTCTGTCTCTGTATTCTATATCTATAATCACATAAGACTATAAAATGTGAATCATGAATCAGCAGAAGGTTGTGGGGTTTTTTTTGTATGTAACGAGGTTTTCTCCCTCATTTTTCTAG
Seq C2 exon
AATGGATGATGCTGAAGCTTGTTTCATTCTAAGTAGCCGCTGTGAGGTGGACAGAACAGCAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002451:ENSGALT00000003864:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]