MmuINT0085842 @ mm9
Intron Retention
Gene
ENSMUSG00000052726 | Kcnt2
Description
potassium channel, subfamily T, member 2 [Source:MGI Symbol;Acc:MGI:3036273]
Coordinates
chr1:142325386-142328010:+
Coord C1 exon
chr1:142325386-142325522
Coord A exon
chr1:142325523-142327946
Coord C2 exon
chr1:142327947-142328010
Length
2424 bp
Sequences
Splice sites
5' ss Seq
AAAGTAGGC
5' ss Score
5
3' ss Seq
TGTTTTCTGTCCCTGTTTAGGAT
3' ss Score
12.77
Exon sequences
Seq C1 exon
GATTATTACGTGGTGATTTTGTGTCCCACGGAGATGGATGTGCAAGTTCGGAGAGTACTACAGATTCCAATGTGGTCCCAGAGAGTGATCTACCTTCAAGGCTCTGCCCTTAAAGACCAGGATCTCCTGAGAGCAAA
Seq A exon
GTAGGCATCCTCCATCCTTTCTATCTCTCTTCATTTTCAATCTTTTGATAACTTTTCTCTCCAAACGTTTGCAAGCTGCATTTCACATGTATTTAAATATAAAATTTAGCTCTGCTTTACTAATTTTAGAATAACAGTGCTAAAAGTATAGGCTCCTGTTTTCTACTTTCGGTTTTAAGGCAGATATTTAAGATAATAATTCTGCATGGTGTGGTAAGAAATTTCCATGCTAGAATTATCTTTGCTGTCAGAGATAGACAAGAGGTATTCAGACTCCCAATTGGAGATATCTCCTAATTTCTCAATTCTGGTTATATTTTATAGGACAAAATCTTGGACTAAATATTATATGAGATATCAAAGCAATGAGTCAGGGTTTGAACTGTAAGAAACTTGGAACATTCCTCAGCATCACCTTTTACCTTGCAGGGGTCAAAGTCTGAAGAATTCTTAGAGCTGGAGGAAACAGGATCCTAAGAGGTCCTGCTGAGTTGCTCTCAGATTGTGCTTAAGCCTGTCAATAGGGCTTAAAAGATGGCTTGGGCTAGACCTTTGTTATGGGAAGCTAGTCTTCTTACACAGCAGTAGAGAGTGAGAAAAGGGAAGGGAAGGAATGCTGAGGTCATGGTGTGATCATGACTAATATAAAACAACTCCTTTTGATTTAAAACCAAGAATCGCTGGAGGGTGTGGGGAGGAGTGGAGTGGGGGTGGAGGTTGCTGGATGCCTTCTGCTGTATTGAAAGTTTTCAGTGGGTCTTCTTTATTTTGGATGTTTCTATGTGCTTCTTTAAATGTGAAGGTTTCCTCCTCACAGTACTTAACCTAAGATTTTTTTTTTTTTTTTAGTTTTCTTGTCTCACGTCATGACCCAAATGATGCTTAGGTACCAAGTAATGATGAATTCTGATATCACTTTTGTTTAAAATAAATTTAGCTGAGGTTTGTTTTTCTTAATGATTTAATCTAAGAAACAAAACAGTGAGTAGAAATTACCACAGTAAAAAATGAATGGTAAATGTTGGAAATTTAAATGTCTTACAGCATATATTTTATCCTAGCGTATACCTCTGTTAAACACTCCTTGTGACACTTTGAAGATTTAGCTATATCCTATTTGATATCTATATAATTATTTGGGTACCTAGAAGATGTTTCCACTTTTGTATCTTCTAAATCTCTACATTATGTTATCTCTATAAATCCTTCTCCTTAAATTACTGTGAGTTAGGTTCTTCATTCTGCTCATCCAGAGTGTGTTGATAAGCCTGATAGTGGTGGAAGTTTTTTATTCTGGGAATTAAATCTGAGCTCTTTGTATTAGCAATAATTGTGTCAGATAAATGCTTTTTAAATTTAGCTATCACTATTAGGAATGAAATGATTTTCCACCAAGGGGTCACATTTACAGAAAACCCTTCATGGAAATTGAAAATGAGCAAATTAAATACGAGACCTGGAACGGGGACTGTTGTCCAGCTCTCACTGTTCAAAAAGCTGGGCTGAGAAAGACGTCAGGGTGACTGTTTACTGCACGTTCATTTTAGATCCTGACTTCATATATGATATTTAGGATTTAATGTTAATTAATACATTCTTCAGCATAATTCTCCATGCAAGAAGCCAGGAGTAGGCACCTCTAAACCACAGGCCAGTGGCATGACATGACTTCACTGCTTTACTGAAAATGATAATTTAGAAAATGTTATCTACTATCCTTGTTATTTAGCAACCCCCGCAGTACTTTCTTCAGAATTGTTTTGTTTGGACTAATTTTCCAGGCTTTTTGTTTTTCTTCCCCAGTGAAAACAAATATGTTTTTAAAGAATCTAACTTTATCACAGTGTAGCAGGAAGATAAAGCATTGCTCAGTTGAAAAATAAACATTCTTTAGTAACTAACTTTAAGAACTGAAGAACATTCACATGACAAAAAGGGTTGGAACAAAAGTTGAACAGGTTCCTGGAAACAAAGAGTGGAGTTTGACTTAAATCCGCTAAGCATATTTGTTCCCTCTCTTCAACTGAGTTACTGAAGTGAAATGAGTTAGCCATAAAAATAATAATAATGTAATGATCCTGGATTGCAAAACATATATTAATTAAAATATTATATATAGATATAAAAATACTTATATAAGTATACATATGTGTGTGTATATATATATATATATACATATATATATATATATATATATATATATATATATATATATAAATTGAGAAGTAAAAGCAAATTCAATTCCTTTTTCTCTCATTAATTGTGAGCTGTATGAATACTGCAAGTGTAGGCAAGCTCAGCAAGACAGCCAGTTGTTCCTTAAGCTTGAGGACACACATGTTCGGGATGGGGGTCAGGCAATGACATAGTCCCGTCAGTAGCTAGCATTTCAGTATGGTTTCTCTGTTTTCTGTCCCTGTTTAG
Seq C2 exon
GATGGACAATGCTGAGGCCTGTTTCATTTTGAGTAGCCGCTGCGAAGTGGATAGAACCTCATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052726-Kcnt2:NM_001081027:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: