RnoINT0078072 @ rn6
Intron Retention
Gene
ENSRNOG00000013312 | Kcnt2
Description
potassium sodium-activated channel subfamily T member 2 [Source:RGD Symbol;Acc:735074]
Coordinates
chr13:57312730-57315386:+
Coord C1 exon
chr13:57312730-57312866
Coord A exon
chr13:57312867-57315322
Coord C2 exon
chr13:57315323-57315386
Length
2456 bp
Sequences
Splice sites
5' ss Seq
AAAGTAGGA
5' ss Score
3.63
3' ss Seq
TGTTTTCTGTCTGTGTTTAGGAT
3' ss Score
12.6
Exon sequences
Seq C1 exon
GATTATTATGTGGTGATTTTGTGTCCCACGGAGATGGATGTGCAAGTTCGGAGAGTGCTACAGATTCCAATGTGGTCCCAGAGAGTGATCTACCTTCAAGGCTCTGCCCTTAAAGACCAGGATCTCCTGAGAGCAAA
Seq A exon
GTAGGAATCTCTTGTCTTTGCATTTTCAGCCCTTTGATAACTTTTCTCTCCCAACCTTTGCGAGCTGCGTGTCACCTGTATTTAAATATAAAATTTAGCTCTGCCTTTCCAATTTTAGAATAACAGTGCTAAAAGAGTAGGCTCCTGTTTCCTACTTTCATTTTAGGCCAGATATTTAGGATAATAATTCTACATGCTGTAAATCTCCATGCTAAAGTTACCTTTGCTGTCAGAGATGAACTAGAAGTATTCAGACTCCCTCTTAGAGGTATCTCCCAGTTTCACAATTCTGGTTATATTTTACAAAGACAAAAACCTCGAACTAAATATTATATGAGTTATCAAAGCAGGAGTCAGGGTTTGAATTTTAAGAAACTTGGAACATTCTTCAGCAACACCTTTTGTCTTGCAGGGTCAAAGTCTGAAGAGTCCTTGGAGCTGGAGGTCCTGCTGAGTTGCTCACAGATTGTGCATATGCCTGTCAATAGGCTTTAAAAGATGGCTTGGCCTAGACATTTGTTAAGGGAAATGTGTCTTCCAACACTGCCTTAGAGGTTGAAAAAGAGCTGAAAGACTGAGGTCATCTAGGATCAGGACCAACACAAAACAACTCCCTTTTAAAACCTGGAACCTCTAGAGGTTGAGCTTCCTGGGAGGGTGGTGTAGGGGAGGGGTTGCTAAATGCCTTCTGTTGCTTTTAAAATTTTGACAGTGTCTTCTTAATTTTTGGATGCTACTATTTGCTAATTTAAATGTGAAGATTTCCTCATTACAGTAGTTAATCAATGAATATTTGTGTGCATGACCCTCCTGACTCAAATGATGCTTAGATACCTATTAGGAAGGAATTTTCACATCACTTTTGAATAAGAGTAAAATAAATTTACCCGAGGTATGTTTTATTTAATGATTCAATTTTAAAAACACAACAGTGAGCAGAAATTACCACAGTAAAATGAACAGTTAATGTTAAATATGTAACAGCATAAATTTTGTCTTAGAGTAGATCTCTGTTAAACAGTCCATATGACACTTCTATGAACAGTCAGATATTCCCAAGTTCTCATGTGAATTGAAGACTTCGCTATTTCTTATTTGATACTGATATAATCATTGGGGTACTTAGAAGATGTTTCCACATTTGTATCTTCTAAACCTGTATATTTTGTTGTCTCTATAAATGAATATCCTTAAATTACTGTGAGGTGGGTTCTTCACTCAGCTTCACAGTGTGTTGATAAGGGTGTGAGTGGTGGAAGTCCCCCCTGTCCCCCAGGGAATTAAATCCGAGCTCTTGGTTTTAGCAGTAACTATGTCAGATAGATACTATTTAAATTTAACTATCACTATTAGTAATGAAGTGATAGTTAAATCCACAAAGGGCTCACATTTACAGAAAACCCTTCATAGAAATTAAAAATGAACAATTTAAAGAAGAACTATGATAAGGGGACTGTTGGCCAGCTCTCACTGTTCAAAACTCTGTAGTGAGAAATATGTCACGGTGACTGATTATCCAGTGTACGTTCATTGCAAACCCTAACTTCATATATAATATTTAGGATTTAATGAATGCATTCTTCACCATAATTCTCCATGCAAGAAGCAAGGAGTAGGTGCCTCCACAAGAGCCCCAAAGGTCAGTGGCATGACGTCACTGCATTACTACTGAAAATGATACTTAGAAAATGTTATCCAATACCCATGTTATTTAGTAACCTCCCACAGTACTTTCTTCAGAATTGTTTTATTTGGATTAGTTTCCTGGGCTTTTTGTTTCTCTTCTCCAGAGAAAACAAAAAACAAACAAACAAACAATAAAAACCAAAAAAAAAAAAAGATTTTGAAGCATCTAACTTTATCACAGTGTACCAGAAAGATAAAGCTTTACTCAGTTGAAAAATAAACATCCTAGTGTTTTAAAATCTCTACTTATGAAGGACTAAAATATATTCTTTCGTTACTAACTTTGAGAAATAAAGAACCGTCACATGACAAAAAGGGGGTTGGAACAAAAGGTTGAACAGCTTCCTGGAGACACAGTAGGGTTTGAGTTAAATCCACTAAGTATATCTGTTTTCTCTCTGAGTCAATGATGTGGGAATGAGTTAGCCATAAAATAATAATAATGTAATGACCCAAGTTTGCAAGATAAAATATTAATTAAATATATTGTATAATTATAGAAAATATTTATAAAAATACACATATGTATGTATACATAGATAAATTGAAATCAGAAAAAAAGCGAATTCAATTGCTTTTTGTGCCATTACTTCTGGAGCTGTACGAGTGTGCAAGCTGTTGTCTCACTGATGTAGTCAAGCTCAGCAAGATAGCCAATAGTTCTTCTTTCAGGTTAAGGAAACACGTGTGTGACGCGGACCAGGCATTGACATCGTCACTTCAGTCAGGAGCTCTTCACTATGGTTACTCTGTTTTCTGTCTGTGTTTAG
Seq C2 exon
GATGGACAATGCTGAGGCCTGTTTCATTTTGAGTAGCCGCTGTGAAGTCGATAGAACATCATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013312:ENSRNOT00000017884:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]