GgaINT0038233 @ galGal3
Intron Retention
Gene
ENSGALG00000002451 | KCNT2
Description
NA
Coordinates
chr8:2788230-2791062:+
Coord C1 exon
chr8:2788230-2788338
Coord A exon
chr8:2788339-2790912
Coord C2 exon
chr8:2790913-2791062
Length
2574 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
TTTATCTGTACATGTTTCAGAGA
3' ss Score
7.05
Exon sequences
Seq C1 exon
ATCATGTTGTGTGTGAAGAAGAATTCAAATATGCTATGCTAGCTCTAAACTGTATATGTCCAGCTACCTCTACATTAATCACACTGCTGGTTCATACCTCCAGGGGACA
Seq A exon
GTAAGTATATATTCCCATTAACCCAGCCTGGGGGAATCCTTTTCAAGACTATCAGTCTATTCAAAAATCACTGAAAGGATTTTCTGAAAGATTAGTTCATGTTTCAACAGAAGCCCTAAATTTGTTGACTCACAAGTTTAGGAACTTTACTGTAGTGGTTGGGAGCGTTCAGATTTCTATTATAGGTAAGACTTCATTCAGAGAGTAGTTTGATAATTCAGAAGTTCAAAATAAAAAATGTCTCCCTGCTATTCAAATAAACAAACAAACACGTTCCCACCCATAGTGATTAAGCACTGGAATAGGCTCCCCAGGTTGGTGGTTGAGTCACCATCCCTGAATGTGTTTAAAAACCATTTGGATGTGGTGCTCAGGGACATGATTTAGCAGAGAGCTGTTAGACTTAGGGTAGTATGGTTAGGTTGCATTTGGACTTGATGACCCTTAAGGTCTTTTCCAACTTGTGCAATTCTATTATTAAGCTCTATCAGGGTCCCTTTCCTGGAGTTCCTTCTGATCCAGCCTTCTCTGTCACTTGAAGCAGACAGCTTCTCTCCTTATCTTTTAGATCCACTAGGAGACGGTATTCACAGCCAGCTGTAGCTGTAGTCACTGCTGAGGGAGGTCCTGGAAGCCTTCAGCCACAGCAATGCTCCCGGCTGCCAGACACTAACTTGTCCCTTTTGCAAAGCTTTCTGGAAGAAAGATGCTTCCAAAAGCCATCCTAACCAATGTTTATCAGAGAACTACAGAACATTTGAAAACTGAAAAAGCCCTACCAGACTCAAATATTAATTAATATTAATGCAACTATTTGTACTCCTATAAATCAAGTACCAACCAATTTATGTAGTTACATGCAGGGAATCTACTTGCTATGCTTACTAAGTAGTGTGACACTTAGTAATGTAAGCTTCATGATTATCAGAAAAGAACTAAGTACACAGAAATTACTGCAAACTGAAAGCAATAAATAGCAGCAGAACATAGAAGAATAATTACTCTGTACTATCCTAATTAGAATGATAGGACAATAAACAGTAAAGAAAAAGAAACACACAAATTAAAGACAGCATATTTACTAGTATAAATCTGTGAGGAAGTTAGGGAAAGTGTTCATTTCCCAAGCAATTTTGATCACATCAACTTTCTATTAGGATTAAGAAGAAATTTGCTGCTGCTTATGCCATCTAGCTTAAGTAATATTCACAGTGGCCAGGCTGGTTGCAATTCATCTTATTCTCATATAAGTTGTTGTAGAACTCAGATTATGAGGGACAAATTTTCTATCTTTATTCTAATTTTATTGTTATTATTAATCTTAACATTTACCTTTAAACATTTCCAATCTATTAATAGAGCTCTAACAGTTTGTAATACAGTACAAAGTTCTGGAAGAAAGTAGCATTTCTGACCTGAACTTCATGTGATCGTTACAGAACGGCACCATGGGAAGCTTTTCGACAACTCACTGGAACCAAGCAGACTCTGAACAGGTAAATATTTTGGTTTTGGAGGTAAAATTCAACATGGAACAATTTTCTTCTGCAATCAAGTTTCTAGTTTTGCTATTCTATATCTAATGCACTGTTTTTAATACTGCTGCAATAAAAACGTTTACCTTAGATCCATTAACCTTGGAACAAAATGTTTCTGTGCTGAGGGTGAGGAAAAAATAGAAACTGAAGACAAACAAATTGTGTCAAGATACTAAAAAAGTAGAAAGGAACACTAACAAGCCCCAGTATCTAGAGATCTTAGCTCCAGAAGGCAAGAGACAGAGCATATTTGTCACTTGTATTTTCTGATAAAGATACGTATACCTCCACTATATCTAGTAAAGCCCATGTAGATGGCAACTTGTTTCTTTGTAAAATTTCAGTAAAGGAAAAGGTTTGCAGAGGCCCATAGTCTGCAAGTTTTGGTGTTAGTAAGGTTTGGAATATTTCCTCTAAAAATGCATTTGGATAAAGAACGTTAGCAGCACTTGGTAAAGGACTGAATGATTAATAATTTCTTTTCTTGCACTACAGAAGAGGATAGTATACAAGACACAGTAACTAAAACACCTTCTGGGTAAATACGGAAGACAACAAACATGAGCAAACGCAGAGAAAAATCTTTCTTATAGATAAAGTGACATAAATCAAATGAGTCCTGCCTACATAAGTTATTTTCAATTATTCTTTACCACTTCAAACAGGAACCAGACAATCTGTGAAGGAGCATCTGAAGAGACTGCCTTTATGAATAGAATGAGCATGCTGTTGGTTTCACCTGTCATCTTTCAATTGCAGTGAATCTACTTCTTATGGTGTGAATTTAACCCAATTCCACCATGTTTCTCCTGGTGTTGAAGTACATAATCCAACTGTTACTTAGCAGAAAATGCTCTCTATTTCATCAAAACTATCTTCATATTTACAGTATTAATAAGCTTTGATCTCGGATACTTCTTTCAGATTAGCCCATGGAACCTCTCTAATAGATATTTGTAATTTCTACTGCTAAATGATAATGCTCTGATTAATAAGAATGGTTTTAAATTATTCTCTTTATCTGTACATGTTTCAG
Seq C2 exon
AGAGAGTCAGCAATCATCAGAACAATGGCAGAAAATGTATGGCAGATGCTCTGGTAATGAAGTGTTTCACATTAACCTGGAAGAAAGTACTTTTTTTGCTGAATATGAAGGGAAAAGCTTCACATATGCTTCTTTCCATGCACATAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002451:ENSGALT00000003864:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.020
Domain overlap (PFAM):
C1:
PF0349313=BK_channel_a=FE(34.0=100)
A:
NA
C2:
PF0349313=BK_channel_a=FE(47.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]