GgaINT0038233 @ galGal4
Intron Retention
Gene
ENSGALG00000002451 | KCNT2
Description
potassium channel, sodium activated subfamily T, member 2 [Source:HGNC Symbol;Acc:HGNC:18866]
Coordinates
chr8:2760426-2762030:+
Coord C1 exon
chr8:2760426-2760534
Coord A exon
chr8:2760535-2761973
Coord C2 exon
chr8:2761974-2762030
Length
1439 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
ACTTCATGTGATCGTTACAGAAC
3' ss Score
7.41
Exon sequences
Seq C1 exon
ATCATGTTGTGTGTGAAGAAGAATTCAAATATGCTATGCTAGCTCTAAACTGTATATGTCCAGCTACCTCTACATTAATCACACTGCTGGTTCATACCTCCAGGGGACA
Seq A exon
GTAAGTATATATTCCCATTAACCCAGCCTGGGGGAATCCTTTTCAAGACTATCAGTCTATTCAAAAATCACTGAAAGGATTTTCTGAAAGATTAGTTCATGTTTCAACAGAAGCCCTAAATTTGTTGACTCACAAGTTTAGGAACTTTACTGTAGTGGTTGGGAGCGTTCAGATTTCTATTATAGGTAAGACTTCATTCAGAGAGTAGTTTGATAATTCAGAAGTTCAAAATAAAAAATGTCTCCCTGCTATTCAAATAAACAAACAAACACGTTCCCACCCATAGTGATTAAGCACTGGAATAGGCTCCCCAGGTTGGTGGTTGAGTCACCATCCCTGAATGTGTTTAAAAACCATTTGGATGTGGTGCTCAGGGACATGATTTAGCAGAGAGCTGTTAGACTTAGGGTAGTATGGTTAGGTTGCATTTGGACTTGATGACCCTTAAGGTCTTTTCCAACTTGTGCAATTCTATTATTAAGCTCTATCAGGGTCCCTTTCCTGGAGTTCCTTCTGATCCAGCCTTCTCTGTCACTTGAAGCAGACAGCTTCTCTCCTTATCTTTTAGATCCACTAGGAGACGGTATTCACAGCCAGCTGTAGCTGTAGTCACTGCTGAGGGAGGTCCTGGAAGCCTTCAGCCACAGCAATGCTCCCGGCTGCCAGACACTAACTTGTCCCTTTTGCAAAGCTTTCTGGAAGAAAGATGCTTCCAAAAGCCATCCTAACCAATGTTTATCAGAGAACTACAGAACATTTGAAAACTGAAAAAGCCCTACCAGACTCAAATATTAATTAATATTAATGCAACTATTTGTACTCCTATAAATCAAGTACCAACCAATTTATGTAGTTACATGCAGGGAATCTACTTGCTATGCTTACTAAGTAGTGTGACACTTAGTAATGTAAGCTTCATGATTATCAGAAAAGAACTAAGTACACAGAAATTACTGCAAACTGAAAGCAATAAATAGCAGCAGAACATAGAAGAATAATTACTCTGTACTATCCTAATTAGAATGATAGGACAATAAACAGTAAAGAAAAAGAAACACACAAATTAAAGACAGCATATTTACTAGTATAAATCTGTGAGGAAGTTAGGGAAAGTGTTCATTTCCCAAGCAATTTTGATCACATCAACTTTCTATTAGGATTAAGAAGAAATTTGCTGCTGCTTATGCCATCTAGCTTAAGTAATATTCACAGTGGCCAGGCTGGTTGCAATTCATCTTATTCTCATATAAGTTGTTGTAGAACTCAGATTATGAGGGACAAATTTTCTATCTTTATTCTAATTTTATTGTTATTATTAATCTTAACATTTACCTTTAAACATTTCCAATCTATTAATAGAGCTCTAACAGTTTGTAATACAGTACAAAGTTCTGGAAGAAAGTAGCATTTCTGACCTGAACTTCATGTGATCGTTACAG
Seq C2 exon
AACGGCACCATGGGAAGCTTTTCGACAACTCACTGGAACCAAGCAGACTCTGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002451:ENSGALT00000003864:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.150
Domain overlap (PFAM):
C1:
PF0349313=BK_channel_a=FE(28.8=100)
A:
NA
C2:
PF0349313=BK_channel_a=FE(15.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]