GgaINT0038244 @ galGal3
Intron Retention
Gene
ENSGALG00000002451 | KCNT2
Description
NA
Coordinates
chr8:2812402-2814440:+
Coord C1 exon
chr8:2812402-2812530
Coord A exon
chr8:2812531-2814139
Coord C2 exon
chr8:2814140-2814440
Length
1609 bp
Sequences
Splice sites
5' ss Seq
GAAGTATGT
5' ss Score
6.97
3' ss Seq
CTTATCACTTTCTTTTCAAGTCT
3' ss Score
7.1
Exon sequences
Seq C1 exon
ATGAAAATCACAGAAGAGGATTTATGGATTAGAACATATGCCAGACTATATCAGAAACTTTGTTCTTCTACAGGAGACATTCCAATTGGAGTCTACAGGACAGAATCCCAAAAGCTTACAACGTCCGAA
Seq A exon
GTATGTCAGTTTACTATACTCTCATGGGATTTGGTTACATCTTATTTAAAGAATACTGGGGATGTCATGTCAGAAAATGCACTTAATTCCAACCCACTGGAAGGTCACCATCTGCTGATGGATATACAGTCAGGTTAACACACGGCCAAGTCTATTTGCAGATTTTCATTCCTTTGCCCATCTACAAGGAAGTGGCTGACTGAAATAATAGCTCAAGTACAGGTAGGACAGGCTCTAATAGTTAGCTCCAGTCTGACTTTGCATGTAGTGACAACTCACAGCACTATCAATAAGCTGTATGTCCAGTGTGGGAAGCCTCTAAGATTATTTTCAACACTGATAAAGTCAACAGAATATTGCTTTCAGATTTTATTCTAATAGGAAAAAAAGAATTTTAGAAACATAGTAGCATTCCAGATAAATTTGCTTTGTTCACTAATCACTTTGAGCATATTACTAACTCTTTCTGTTCTTAAGAATTCTATTAAGTAAGCAATCACCATTTTCAAGTCATCTTTATTTTATGCTTTAAAAACAAACAAAAAAAAGGGACAAGAAAACCACAATAAACTGCCAATACTCAACACACCAAAAATCAGTCACAGAATCACAAGAATGACTTGGGGTGGCAAGGGCCCTTAAGGCTTACACAGTTCCAACCCCCTGCCATGAGCAGGGTTGCCACTAACTAGATGAGGCTGCCCAGGGCCCCAGCCAATCTGGACTTGTATATCTGCAGTGATGGTGCATCCACAACTTCTCTGGGCAGCCTGTGCCAGTGCCTCACCACCCTCTGAGTAAAGAATTTCATCATAAAATCTCATTTCAATCTCCCCCCTTTTAGTTTAAAACCATTCCCCCCTTGTCTTATCAATATTTTCCCCTGTAAGAAGTACTGGAAGGCCTTCAAGAGGTCTCCCAGAGCCTTTTCTTCTCCAAGCTAAAAAAAGGCTGAGATCGCTCATCAGCAATTGGGTAATAACTGAGTAATAAGACCTTACTGATACCAGGGATAGTTTACTATTTCAATGACTGTAAAAGACATGTTTTAGATATCACAATAACAACTCATTATCAGTGGCTTCAAAAAGATAGCTGAAAGTATTACCTAAATCTTATGCTGACGTTAAAACAACTTGAAAAAGGAGCTTTTGAAGTGTTTTCCCTTATATTTCTTATTTTCTTTTTGTATGTTACAACTACATATGTAGTCCATCTACTTGAGTTATTAGGTGACATGAAGAAAAAAGTTGAAGACCAGATTTTGATACTTTTAAACTTGCTTTTTTCTTAACTGTCCTGGTGAAAAAGCAGCATGACTGTACTTGTAGGTAGAAACTTCAGATCACCTCATTTTGAAAATGTGCCCTGAGTCACACTGGTAAGATGTGACTTCTGCCTTTCATCTTAAGAGAGCACTCAGAGCAGTGCAATAAATGTTGAATTACTTCCTAATGAATTCACAATATATATCTAAACAGTAGTTTAGATAGCTTCAAGTTATATAACTTGAATTTCTAAGAATAGGATTTTCAACTGCACTACTGAAAACATTTTACTCCACTTCAATTTTTTAATGCCCTTTCTCTCTTATCACTTTCTTTTCAAG
Seq C2 exon
TCTCAAATCTCTATCAGTGTAGAAGAATGGGAAGACACTAAAGACACCAGAGAACAGGTTAATTATCGTAGTAATCATCGTAACTCAACATCTAGCGATCAGTCCGACCATCCTTTGTTACGACGAAAAAGCATGCAGTGGGCTCGACGGCTGAGCCGAAGAGTACCGAGACACTCTGGCAAAACAGCTGAAAGGATAAGCCAGCAGCGAATGAACCTTTACAGGAGGTCAGAAAGACAGGAACTTGCTGAACTTGTGAAAAACAGAATGAAACATCTCGGCCTTTCTCCAGCAGGATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002451:ENSGALT00000003864:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=NA C2=0.703
Domain overlap (PFAM):
C1:
PF149431=MRP-S26=FE(41.6=100)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAATTGGAGTCTACAGGACAGA
R:
TATCCTGCTGGAGAAAGGCCG
Band lengths:
348-1957
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]