GgaINT0038284 @ galGal3
Intron Retention
Gene
ENSGALG00000003955 | CEP350
Description
NA
Coordinates
chr8:6336479-6337099:-
Coord C1 exon
chr8:6336945-6337099
Coord A exon
chr8:6336669-6336944
Coord C2 exon
chr8:6336479-6336668
Length
276 bp
Sequences
Splice sites
5' ss Seq
AACGTAAGT
5' ss Score
10.74
3' ss Seq
ACAGCACTGTTCATTCTTAGGGT
3' ss Score
7.09
Exon sequences
Seq C1 exon
CAGTAATTCAAGCATTCAGGAAGAACTTCCTAGCAGGAAGTCTCCCCGTGAGTCTCGATCTGTTGAACTTGCATCTCAGCATTCATCTGGACCCAGATCTGCAGCATCTTCTCACTCATCTACTTCATCTAAAAAGAGAGGAGGGAAAAAAGAAC
Seq A exon
GTAAGTGCGGCACTTGACTGGAGGATATTTGAATTCTTTGAAGAAAGTTTTAGGATTTTCTTGTTATGAAAGCTGCAGTCTTCCTGTGTATCCAGAGCCAATAATCTCACATTGATAGGATGTTTTCCTCTAGTGATTCTTTGCTAAATTTTCTTGACTCTGATTTTTCTCTGATGTTAAAACACAGCTGTCCAGAACTAAGTAGGCAGAGAAATCATAAAAATGGTGAAAAGTTGTCCCCTTCCTAGACTATCTGACAGCACTGTTCATTCTTAG
Seq C2 exon
GGTTGGAGTCTTTCAATGGAAGTTCTCACCACATTCCTGTGGCAGAAGATAAAATTCCGTCTGAATTAGAGTGGGGATCCCAACAAGCAAAGAAGTCCATATCAAGTAGCAGACTGTCTAGTAAAGACTACGAGCAGAACACGGATACTGACAACACAATAGAAAATTTGTCTGGACACTCCATGTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003955:ENSGALT00000006306:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGTGAGTCTCGATCTGTTG
R:
TGGAGTGTCCAGACAAATTTTCT
Band lengths:
294-570
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]