MmuINT0034826 @ mm10
Intron Retention
Gene
ENSMUSG00000033671 | Cep350
Description
centrosomal protein 350 [Source:MGI Symbol;Acc:MGI:1921331]
Coordinates
chr1:155922314-155924737:-
Coord C1 exon
chr1:155924565-155924737
Coord A exon
chr1:155922501-155924564
Coord C2 exon
chr1:155922314-155922500
Length
2064 bp
Sequences
Splice sites
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
3' ss Seq
TACAAAAATTTCCTTTCCAGGGT
3' ss Score
8.96
Exon sequences
Seq C1 exon
AGTTGATGGTAGCAGCTTGGGCGTTCAGGAGGAGCATCTGAGCAGACAGTTTGCCTGTGACCTTGCCTCTGTGGATGCTACCTCCCAGCACTCCTCGGGAGCTCGCTCTGCTGGGTCCACTCGCTCCTCCTCAGCTTCTAAAGGGAAGAAGGGGAAGAAAGACAAGATGGACT
Seq A exon
GTGAGTGGAGTCCCACCTGATGGCTTCTCTCTTCTTCATAGTTGTGTGCTAGTGACCTAAAGTTATAGTTTGGTTCTTCAGTTAGGAGATGAATTTATTTATGATAATGTAATTAGCTTTTACATTTGTGAAATATCTTTTGCTATATAACATCAAACTTTTTAGTATAAATTTTTCAATACAGACAAAATACATAATTAAAAATTTAAGAATTACAGATGCTCATTCAAGAACTCTATAAATCAGGGCCAGCACACTCTGGAGATGGCTCAGTAGGGAAAAGCAATGGCTGCTCAATCCTGATGCCTGAGCCTGAGCCTGGAGCCCATGCAAACGTGAAGGGGAGGACACATCGTCATCCCGTGACCTCTCTCTCTGTGTGAGCAGTGGCACTCTTCTAAGTGTGCAGTTGGCTCTCCCACACACAAATAAATAAAATACAAAATTTAAAAGAAGTATAAGTCATCCATAATCCATTTGTTCAGAGGCAGCTGCTATCATTGTTTTTGATGACTTTTTCAAATATATACATGAAGCCATATCTTTATTTTAAAAAGAAATACAAATGATACTGCTCTGCAACTGCTTTAAAAAACCCAACTTGGTAATATATCATGTACATTTCTAAGCATCATCAAACATAGTCCTCAAGTGTCCTTCCCTGTAAAGCAGACTGGAGTTGATAGGGTGATCTGAAGAGCATGGGTGTTTAGTGGAAGTGATGTGTGCTCCATGGTACTTAGCATGGTAGTTGGACCTTTTGGCACTCAGTGCTTGATATACCTGCTGATGTATATAGTTCCACTCTGTTAAATCACTCCGTGAGCATGTGTGTATGTCTGTGGAAGTCAGTGTACAACTGTGGTGGGTTTAGTTCTTCTTCCACCTTGAGACAGACTGTGCATACAAGAAGCTCACTGGCCCATGAGCTTCTGAGATTCTTTTCTTCCATCTCACTGTTTAAGAGCTGGGATTGCAGATACGTGCTACTATGCTTGGTCTTGTGTGGGGTTAGGGGATCCCAACTTTCTTGGTTGGGCAGCAAGCACATTACCCACTAAGCAACCTCTCTAGTCCCATATTTATTCTATAGACCTATAAGTAGGGAGATACAGAGGTCATGCAAAAGCTTCTTGTGCTCACATAATGGTTTCAAGCTTGGGAGTGATTTTTCATATATATATATGAAAAAAAAATATATATATATATATATATATATATATATATATATATATATATATACACACACACACACACACACACACACACATTTCCTAATTTCATATATATATATATATATATATATATACACACACACACACACACACACACACACACACACATTTCCTAATTGAAAAAATAAATTGTGCTTATTGACTTGAAAAATATGAGGTGGAATAGGAATATGGGAAGAAACTAACTGGTCAGTATAGGAAATTATATTTAAAAAAAATTAATTGGCCATAATTTTTAATGTAAAGATGATAGTGCTAACATTTACAATTTTATTTTGGTGAAATAATGCACACATAGCTGGATGTGGTTAGGCATCCTTTAATCTTCACCCTGGGGAGGCAGATGCAGTCTGGTCTCTGTGAGTTTGAGGCAGTCTAGTCTATATGGTGAGTTACAGCGCAGCCAGGTCTATAAAGGCCTCGTCTCAGAAAAATCAAAATAATAATAATAATGCCAGCATGGGCTTGAGATACCATCTCATTTAAATCATTTTCACGTTCAGTGACATTAAGTCCACATTTGTATCATGGTGACTGCCACCACTACCATTTCCACTCTTCCTCCACAGCTACTGACAGCCACTGCTTCTGTAAGTGTGACTATTCTCTACTTCACACAAGTAGAATAACCAGACTGTGGAATTACAGACATGTGCCATATGCCTATTTTCTTAAATGGAGGCAGAAAAATGAACTGCTTTATTTTAGATATGAAAAATAAGTCTTAAATATAAATTAATTTAAAATACTCTGATCTGTAATTTATTTTACTGAAATTTTTTTAGTAAGTCTAATGTTGGAAATTTTCTTACAAAAATTTCCTTTCCAG
Seq C2 exon
GGTTGGATTCCCTCACTGGAAGTGCTCAGAACCCACTCATTGATGAGGAAAAAGTACAGTCAGACTCAGAACGCGGCTCCCATCCAAGCAGGAAGCTTGGGACTGGCAGCAAACTTGCTGTTGGAGACTCTGAGCAGACTCTGGATGCTGAGAGCACACTGGAAGACCTGTCTGGGCACTCTGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033671:ENSMUST00000138762:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.780 A=NA C2=0.931
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types