RnoINT0034605 @ rn6
Intron Retention
Gene
ENSRNOG00000003882 | Cep350
Description
centrosomal protein 350 [Source:RGD Symbol;Acc:621162]
Coordinates
chr13:73566646-73569156:-
Coord C1 exon
chr13:73568987-73569156
Coord A exon
chr13:73566833-73568986
Coord C2 exon
chr13:73566646-73566832
Length
2154 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGC
5' ss Score
4.95
3' ss Seq
TACAAAAAATTCTTTTCCAGGGT
3' ss Score
7.44
Exon sequences
Seq C1 exon
AATTGATGGTAGCAACTTAGGCATTCAGGAGGACCATTCTAGCAGAAAGTTTGCCTATGACCTTTCCTCTCTGGATGTTACCTCACAGCATTCCTCAGGAGCTCACTCTGCCGTGTCCACTCGCTCATCTGCTTCGAAAGGAAAGAAGGGGAAAAAGGAAAAGATGGACT
Seq A exon
GTAAGCAGAATCCCGCCTGATGACCTTTCCCTCCTTCATGGTTATATGGAGTGAACTAAAGTTAGAGTTTGTTCTTTAGTGAGGAGATGAATTTATTTATGATAATGTAATTAGCTTTCATATCTATGAAATATCTTTAATATCTTTTGCTATATAACATCAAACTTTTTAGTATAAATCTTTCAATACAGACAAAATACATAATTAAATATTTAAGTATTTATGGGCACTCATTCAAGAAATATAAATCATATAAACTATGGGAATGGCTTAGTGGGTAAAAAAATTGTATAGCAATGGCTATACAATTCTGACAGCATGAGTTTGATCCCTGGAACCCCTATAAACATGAATAGAGAGGACACATAGTCGTCATTGGCCTCTGTATGAGCTGTGGCAGTCTTCTAAGTGTGCAGCTGGCTCTCCCACACACAGATAAATAAAAAATGTAAAAGGAAGTGTAAGTTATCCGTAATCCATTTGTTCAGAGGCAACTGCTGTTATTGTTTTTGATGATATGTTTTCAAATATATGCAGGAAGCCAGACCTTTATTTTAAAAAGAAATACAAATGATAATGCTTTGCAACTGCTTAAAAAAACCAACTTGGTAGTATATCATGTCCGTTTCTAAGCATCATCAAACATAGTCCTCAAATAAATGTCCTTATCTGTAAAGCAGACTGCAGTTCACATGGTGATCTGAAGGACATGAGAGATTACTGGAAGTGATGTGTGTACCATAGTAGTTAGCATAGTCGTTGCACCTTGGCCCTCAGTAAATCTTTTTGAGTGATTGATATACTTGCCAATGTCTATAGTTCTGTTCTGTTAGAAACAATCACTATGTGAGAGTCCGTATGTCTGTGGAGTCAGGGGTTTAGCTCTTCCTCCACCTTGAGTCAGACTGTGCGTGCAAGAAGCTAGCTGGCCATGAGCTTCTGAGGTCCCCTTCCTCCATCTCCCGGTTTAAGTGCTGGGTTTGCAGATACGTGCTACCATGCTTGGTCTCAGGTGGGCTAGGGGACCCCACTTTTTTTAGTTGGGCAGCAAGAACTTTACCCACTAAGCAACTGCTCCAGTCCCATGTTTATTCTATAGACCTATAGGTAGGGAGATACAGAGGTCATGCAAAAGCTTCTTATGCTCACATAATGGTTTCAAGCTTGGGAGTGAGTTTTCTTTTATATATACTTTTTCCTAATTGAAATGATAAACTGTGCTTATTAAATTGAAAAATATGAGGTGGGATAGGAATATGGGAAGAAACTAACTGGTCAGTATAGGAAAGCATATTTTAAAAAATTAATTGCCTATAATTTCTAATGTAAAGATGGTAGTGCTAACATTTTACAGGTTTATTTTGGTAAAATAATACACATATAGCTAGATGTGGTGAAGCAGTCCTTTCCTCTTAACACTGGGGAAGCAGAGGCAGTCTGGTCTCTGTGAGTTTGAGGCCAGACTGGCCTATTCAGTGAGTTCAGGGTAGCCAGGTCTGTACAGTGAAGGCCTTGTCAGAGAAATCAAAACAATAAGAATACTGCATAGGCTCTTTCATAAGCCCTTCTCAACAGCTCAGCTTTCATCAGGCTAGAGAAGCAGCTTAGTCGGCAGATGTATGTCCTCGGCTGGAGTCTACAAAGGCCTGTGTCTGATCCCCATGCTACAAAATATGTGGCATGATGGTGCATTGCTGTAATGCTAGTACTTGGGAGGTAGAGACAGGAGGACCAGACGTTCAGGGTCTTCCTCGGCTGCACAGTGAGGTGAGGCCAGCATGGGAGACATGAGGTTCCATCCAATTTCAAGTTCAGTGACATTAAGTCCACATTTGTATCATTGCGACCATCACCACTACCATTTCCACTCTTCCCTCCACAGCCACTGACAGCCGCAGCTTCTCTAAGTTTGACTGTCTGTGTACTTCCCACGGTGGAATAGTGGACTCTAGGATTACAGACATGTGCCATAATGTCTGTTTTCCTAAACACAGGCAGAAGAATGAACTGCTTTATTTCAGATATGAAAAATAAGTTTTAAATATAAATTAATTTTAAAGTCTCTGATCTATAATTTATTTTACTGAAAAAATTTTATCAGCTATTTCAGTAAGTCTAATGTTGGAAATTTGCTTACAAAAAATTCTTTTCCAG
Seq C2 exon
GGTTGGATTCATTCACTGAAAATGCTCAGAACATACTTAATGATGAGGAAAAAGTACAGTCAGACTCAGAACGTGGTTCCCCTCAAGGAAGAAAGCTTGGAACTAGCAGCAAACTTGCTGTTAGAGGCTATGAGCAGACTCTGGATGCTGAGAGCACGTTGGAAGAACTTTCTGGGCATTCTGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003882:ENSRNOT00000005195:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.759 A=NA C2=0.984
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]