GgaINT0038304 @ galGal3
Intron Retention
Gene
ENSGALG00000003955 | CEP350
Description
NA
Coordinates
chr8:6312059-6314754:-
Coord C1 exon
chr8:6314752-6314754
Coord A exon
chr8:6314146-6314751
Coord C2 exon
chr8:6312059-6314145
Length
606 bp
Sequences
Splice sites
5' ss Seq
GTAGTAAGC
5' ss Score
4.16
3' ss Seq
ATGTTGTGACTCACTTTCTGTTT
3' ss Score
-0.75
Exon sequences
Seq C1 exon
GTA
Seq A exon
GTAAGCTTCTGCTTTTGCTGTTTCCTGAATGCTCAGTATTTAGTTTTATTCTTGTTGAGGTTCTTGTAAAACTGTAATTATGTGACAGCCTTTTTCCTTTTGCTTTGTTTCCTGTCCCCTTATCACTTGAGGAAAATAAGGAAACAAAAATAATGACAGCTTGAGAAGTAGTTGTTTAAGAACAGGTTTCTTTGAGATACTTTTCAGTGTTTTGCTGTCTGTCATTAGATAATTGCTATATGCAATTCAAATCTTTGCTGTTTTTATAGAATTGTAGAATGGTCTGAGTTGGATGGAACCTTTAAAAATCATCTAGTTCCAGGAATACCTTCTATTAGATCACATTGCAGAACCCTTACTGTGGGCTCAGTGTTGTATGGTGTTATACAATGCCAGTACAAGGAACAGAATTAGGAAAAAAAAGTGCTAGAACCTTGGAACTGGATGAATGTTGCCCATATTCATAGGCCACGTAGAAATCCCTGTGTCCAAGACATCGTTTTGTATTTTTTAGGGTGGAAACCTTGATGTTTAAATTTGTTACCTATGGTTGCAGTCCTCACTAAGATAATGTGGGCTGTACCACATGTTGTGACTCACTTTCTG
Seq C2 exon
TTTTCCTTCAAGATGGTGTACCATCAAAAACTGAGACATCTTTGTCTTTGCACACTAAGAAGGAGGCTGTGACAGATGTTCACACAGAAGAACCTTCTGGAACATCTTTGTCAGTTTCATTGCCACCAAATAGTTCCAGAGCAGGATTTGGTGATTCCGTAGAGAATGTGTCCTCATCATCTCTTCCCAAAGACATAACAGGCAGGATTTCCCATGGGTCAGTAAGCATTGTGGAAAGTGTGTCCAAGGAGGAGGCTGTCCTCAGTCATAAGTCTGAGATATTGGAAAACTTGGAATACATAAAATCAGAGGAGAATGAGCTTGAAGATTCTCATGTTAAGTCTTTGGAGCATTCTGATGTCTTGTTGACATTAGATAAAGAACACGAGGGATCACTTAACATCCTTCCAGAGAAAATCCTCCATTCCAAAAACGAACCCTCTCTAAAGGAACCTTGTTGTTTGACTGCGGAAAGCCTTCATGGTGGGAAAGAAGTCTTAGACAAGAGACTGGCAGACAAAGATGCTGTAACTGTCCTAGACGTAGAAGAATCTTCTCACAAACTGAGTATATCAGCAGAGGAAAAAGATTATCCGCTTTCAGAACATCTGTGTAGTCAAAAGGAGTCATCATACATTGAAGACTTTGAAGGATCCTCCTCCAAGAAACAGCCATCAATTGAAGAAGCACTTACTGTGGAAGAATACAAAGATGATTTTGAAGCATCTGTTCTCTCACCTAAAGAGGACACTCAGTCACTGAAAGAGCAGTCCCAGCTCACGCAAACCAGCAGAAGCAGATCCACCAGCCTTGGCAGTGATGGTGAAATCAGTGAATACCTCAGTGACAGATCTCTCTCTCTCTCTGGCAGCGTGCATTCAGATAGGTTATTGGAACTTAAGTCCCCAGCAGAACTTACAAAAAATACTGAATGCAGAGATGTGGAGAAAGATGAGGCCACTGTTCAGTCACCACCACGGCCCTCTGTTTCAGTGATAGAAGAAACTGATAGTTTGCCAAACTTCAGCATAGGTGATAGGGTGCTTGTAAGTAAAGTCCAGCCTGGAACATTGCGATTCAAAGGTGTGACTAAGTTTGCCGAAGGGTTTTGGGCTGGTGTGGAGTTGGATAAGCCTGAAGGGAACAATAATGGAACTTACGATGGTATTAAATATTTTGATTGCAAAGAAAAACACGGTATTTTTGCTCCTCCCCAAAAAATCTCTCACATTACAGAAAGTATTGATAGCCAATTAGATGCACGTGAGTATGAAGACTCATTCTTTGATGACAGACTGGAGAAGAAACCTGAAAATGAGCAGAAAGGCAAAGGAACTTCTAAAACTAGCAAGGAAGATGAAAACCAGAGCAGAGATACAACAGAGACCTGTTCTCAAGATAAAGCTGCTGCAGACACAGCTGTTTCAGAAGCCTCAGCTGGAAAAAGCATCGATGAGGTCTCATTTTCCAAAGCAAATGGCATAAAGGTTTCTGTAGCTGCTGAATCTTCGGCCCAAGAAGAGTCTGTGGTGGCTTATCTGAAGCATGCTGTAACAGAGGAGACCAACCTTCCTCCTTCCATTTCTGATGTTGCTGATAAGATTTCCAGTGTTCAGCTGGATGACTTCTCAGACTTCTTTTCTGAAAAACTGGAGAGACAGAAAACACTGGGGGAAGAATGTTGTGAAAAGTTAAATGATCTCTCTCCCGGAGTTGTGGAGAAGCCTGCAACTCCGCTTCTGGATTTGCTGACAAAAGAAAAGAACCAATTAGAAGCTCAGCTTAAAATACCACTTAGAGAGGAAGAAAAATCCAAAAACCAACTGGAAAAGGTCAGTTTGCTCACAGACAGTCTGCTTAAAGATTTTGTGAAAGATACAGTCAACCAGTTACAGCAAATAAAGAAGGTCAGGAATGAGAAAATCCAGCTCAGCAACCAGGAGCTCTGTGATGCGAAGGAGCAACGCGGTACCCCATTCCAGCAGGTAGAAGGGCAGATTCCTGATGGCCTGGACAATTTTTTTCTAAGTTCGGACTTAGAAGATGACAGAGAAGAACTTTCTTCCCCAGACATGTGCCCCAGACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003955:ENSGALT00000006306:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.491
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0130220=CAP_GLY=WD(100=9.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]