BtaINT0036798 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008082 | CEP350
Description
centrosomal protein 350kDa [Source:HGNC Symbol;Acc:HGNC:24238]
Coordinates
chr16:62758204-62762734:+
Coord C1 exon
chr16:62758204-62758292
Coord A exon
chr16:62758293-62760734
Coord C2 exon
chr16:62760735-62762734
Length
2442 bp
Sequences
Splice sites
5' ss Seq
TTGGTATGT
5' ss Score
7.12
3' ss Seq
TTTCTTCTTCCCCCTTTAAGATG
3' ss Score
10.18
Exon sequences
Seq C1 exon
CTTAAGATCTGAAACAGCAAAGAATTGGAAATCACTGACAGACTCAGAACGATCCAGAGGATCCCTGGAGTCTATTGCTGAACATGTTG
Seq A exon
GTATGTAACTAGAAAAAATAATCACACTGTATCTACATGGGCTAAAGATTTATACAAATGCCTATGCAATTCTACCTCTAAGTTATTTGGTTAAAAAGTGAATTTTCTAAAGATAGTAGATCATTTAATATTTTAAGTTACTTTTATATTTTAAAGTGATTTACGGGTTATGCATAAGTTATATGAATCAGTCTTTATTGTCCCAGTAACTGACAAAAACTGAATCATAAAGACATTGATCTAAAATGGCTATGAGGGTGTCATCAGCATCTCAAAATTCTCCCTTAATCAGATTTTGCATCTGATTGTGTAATTGTTGGCCTCCACTATTTCTCAGCTGTGTGGTTATATACATTTTTTTCAGTCGAGTCCAAAGAAAAATAAGAACTATTGAAAATAAAGTATAATTAAATGAGGAATTAAAACTGAGGCGTGAAAAAGCCTACCTGGCAGTAATGACAAAGCAGCAATTTGAATTCAAAACTTTTAATTCTTGGTTTGTTGGTTCACTGAATCTTAATTATTTTCTTCTTTAAAGTGCTAATATTTGCAGAAATAGGTGTTTTTTGGGTTGTTTTTTTTTTTTTTTACATTCAAGAGGTTAGTTGAAGTCCCTGGGAAAATTCATTCTTCTAGAAGTATATATACTAGTACATTTGTCCCTCCTTTATTGTTTTTCTATTTGAAAAACATATGTAATATGCTTCATCCAATTCTGTGTTTGCATAATTTGAGAATCAATTTCTCCATAAACTTTGATTCATTTTTCTTAATTTTATAACTTAAGACAACACTTAAAAAATTATACCAAACTTCAGATTTTTCAGTTTAGTTCAGTTCAGTCGCTCAGTCGTGTCCGACTCTTTGTGACCCCATGAATCACAGCACGCCAGGCCTCCCTGTCCATCACCAACTCCTGGAGTTAACCCAAATTCATGTCCATCGAGTCAGTGATGCCATCCAGGCATCTCATCCTCTGTAGTCCCCTTCTCCTCCGGCCCTCAATCCCTCCCAGCATCAGGGTCTTTTCCAGTGAGTCAGCTCTTCGCATGAGGTGGCCAAACTATTGGAGTTTCAGCTTCAGCATCATTCCTTCCAATGAACACCCAGGACTGATCTCCTTTAGGATGGACTGGTTGGATCTCCTTGCAGTCCAAGGGACTCTCAAGAGTCTTCTCCAACACCACAGTTCAAAAGCATCAATTTTTCGGTGCTCAGCTTTCTTCACAGTCCCAACTCTCACATTCATACATGACCACTGGAAAAACCATAGCCTTGATTAGACAGACCTTTGGTGGCAAAGTAATATCTCTGCTTTTGAATATGCTATCTAGGTTGGTCATAACTTTCCTTCCAAGGAGTAAGTGTCTTTTAATTTCATGGCTGCAGTCACCATCTGCAGTGATTTTGGAGCCCCAAAAAATAAAGTCAGCCACTGTTTCCACTGTTTCCCCATCTATTTCCCATGAAGTGATGGGACCAAAAGCCATGATCTTTGTTTTCTGAATGTTGAGCTTTAAGCCAACTTTTTCACTCTCTTTCACTTTCATCACGAGGCTTTTGAGTTCCTCTTCACTTTCTGCCATAAGGGTGGTGTCATCTGCATATCTGAGGTTATTGATATTTCTCCCGGCAATCTTGATTCCAGCTTGTGCTTCTTCCAGCCCAGCGTTTCTCATAATGTACTCTGCATAGAAGTTAAATAAGCAGGGTGACAATATACAGCCTTGACGTACTCATTTTCCTATTTGGAACCAGTCTTGTTCCATGTCCAGTTCTAACTGTTGCTTCCTGACCTGCATATAGGTTTCTCAAGAGGCAGGTCAGGTGGTCTGGTATTCCCATCTCTTTCAGAATTCTCCACAGTTTATTGTGATCCATACAGTCAAAGGCTTTGGCATAGTCAATAAAGCGGAAATAGATGTTTTTCTGGAATTCTCTTGCTTTTTTGATGATCTAGTGGTTGTTGGCAATTTGGTCTCTGGTTCCTCTGCCTTTTCTAAAACCAGCTTGAACATCTAGAAGTTCACGGTTCATGTATTGCTGAAGCCTGGCTTGGAGAATTTTGAGCCTTACTTTACTAGCGTGTGAGATGAGTGCAATTGTGCAGTAGTTTGAGCATTCTTTGGCATTGCCTTTTTCTGGGATTGGAATGAAAACTGACCTTTTCCAGTCCTGTGGCCACTGCTGAGTTTTCCAAATTTGCTGGCATATTGAGTGCAGGTCTTTTAATTATTTTTAAATGTTCTGTTTATTTTTGGTACAGTGTATATTCATAAAGGAAAAATTTACTACCTATGGTAACCTATAAAACAGGTCATATTTACTGACCAGAGCTTTTTCTCACTAATATTTGGTTTTTATTTAAACTTTGGTTTCAGAAATTGAAAGTTGTGATTTCAGTAATTTTGATGTGATTTTTTTTCTTCTTCCCCCTTTAAG
Seq C2 exon
ATGCTGCATTGACAGGTTCTGAAAGATCAGTATCGGAAAAATCTTCATCTGCCTACGCAAAGAGAATGACTGAATTGGATGGTCGGACAGAAGAGCACTTTCAGACTTCTCCAATTCTGAGATCATCAAGGAGGACAAGAGCTGAATCTGGAGATTCTCTAGAAAATGTCCCTTCATTATCTCTTCTCAAAGAATTAAATGCCTCTCATAGAATTCTGGATGTATCAGGTGCCAAGGCTGAAGAAGAGTCTAGTCAAAAATCAGAAATACAAGAAGTAGAATATACAAAATTGGAGGAGAGTGCAATTGAAGATGCCTGTTCTAAACAGTCTAGGAAGGCTGATGTCTTCCTGAAGCTAGACCTGGAACAGGGAGATTCATCTGAAATTCTTTCAAGAAAAGATCTTCCTTTAGATTCTATAAATGTTCAGAAAGACTTAGTTAGATTAGCCATTGAAAATCTTCATAATAAAGAAACGAAAGAGGGACAGTCAAATGAAGATATCAGTCATAGTCCAAACATCCAATCAGAAAAAGAGACTCATGTACAAAAGAATATAAAGAGCAGAGACTCATCTTGGTCACAGCGTCTACTTGCATCTAAAGAGATATCGTACTCTGAAGATTTTGATGTATCGTCTTTCAAGAAAGACATTTCAGCTGAATTGTACAAAGATAACTTTGAGGTGGCGTCTTTGTTGTCACTCAGGAAAGACTCTCAGTCTTGCAGAGAGAAGTTACAGGCAACAAGCATCTCTAGAAGTAGAGCCACTAGCTTTGGTAGTGATGATGAAATCAGCGAGTGCCTCAGTGAGAAAAGCCTTTCTATTCATAGCAGTGTCCACTCTGAAAGGCTGTTAGAACTCAAGTCCCCCACTGAGCTTATGAAAAATAAGGAGCGCAGTGATGTAGAGCATGAACGGGGAGTTACTGAATCCCCTTCCTTGGCTTCAGCTTCTCTTACAGATGAATTACTTGATTTCCACATTGGTGATAGGGTATTGATTGGCAATGTTCAGCCAGGAACTCTTCGGTTCAAAGGTGTGACTAGTTTTGCCAAAGGGTTTTGGGCTGGAGTGGAGTTGGATAAACCTGAAGGAAATAACAATGGAACATATGATGGCATTGTATACTTTGTGTGCAAAGAGAAGCATGGGATTTTTGCTCCTCCTCAAAAAATATCTCACATTCCAGAAAACTTTGATGACTATGTAGACATAAATGAAGATGAAGACTCTTACTCAGATGAGCAATATCAATATTATAATCAAGAACAAAAAGATACCGAGGGTCCCACGTCTGACAGAGAAAAGGATACAATTGAATATTTTTATGAGAAATCTCTACCTAGTGTGCATGACACAGAAGCCTCAGTTGATAAAAGCCTTAAAGTAGAGACAGACAATATACAGGACATTCCTGGGGTACTCGAAGCCCATATTCACCAGCAGAATTCAGTGGACTCACTGATGTCTTCAGAGGAAAACAAAGACCTTGTTTCTGATGCCACAGAAAAGGTTTCTTCTGTTGTAGAAGACGATACTTTAGATAATACCTTTTCCGAAGAGTTAAAGAAGCAACAACAGTTGACTGAAGAGGAAGAGAACTTACATCCCGAAGTTTCAGAAACGCTTTCTACCCCACTTCTGGACCTGTTAGCAAGAGAGAAGAACCAATTGGAAGCCCAGCTGAGGTCATCTGTAAGTGAGGAAAAAAAGTCAAAGGAACAGCTAGAAACAGTCAGCTTACTGACAGACAGTTTGCTCCAAGTCTTTGTGAAAGACACAGTCAATCAACTACAACAAATCAAAAAAGCTAGAAATGAAAAAATCCAGCTTAGCAATCAGGAGCTTCTTGTTGAGGATCAAAAGAAAGTACCACCCCAAGGCCTATCCCAAAATCTTGAGGAACAGTCACCAAGCGTTCCGGGTTGCTTCTTAAGGTCTGAATTGGAAGATGAGAAAGAGGAGATTTCCTCACCAGATATGTGTCCTAGACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008082:ENSBTAT00000010631:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.903 A=NA C2=0.522
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0130220=CAP_GLY=WD(100=9.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development