GgaINT1009171 @ galGal4
Intron Retention
Gene
ENSGALG00000003955 | CEP350
Description
centrosomal protein 350kDa [Source:HGNC Symbol;Acc:HGNC:24238]
Coordinates
chr8:5992235-5995428:-
Coord C1 exon
chr8:5995346-5995428
Coord A exon
chr8:5994310-5995345
Coord C2 exon
chr8:5992235-5994309
Length
1036 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGT
5' ss Score
9.81
3' ss Seq
ACTTTCTGTTTTCCTTCAAGATG
3' ss Score
9.25
Exon sequences
Seq C1 exon
GCCAGAGACAGCTAAAAACTGGAAATCACTGACTGAATCAGAGAGATCAAGAGCATCTTTGGAATCCATTGCAGAGCATGGAG
Seq A exon
GTATGTAACTGGAAAAATCAGTACTACAGGTGAAGATCTTGAAGCCTGACTATTTTAAACTTCTTTAATGTTTTACTTCTTGATTCAGGAAGGGATTCTAAGAGGATGTGCAGGCTTCATAAAACCATAATGATGAAGCTGCATTTTTACTCTTCCATGTTTTAATTTTAGAAATATTTTGAGGGTAGAGTTTCTTTAATTATGGCTCCCCTGCTTGCTCCCCTGCTTACCTATTCTGAAACCCCACAGTATTTGAGTTCCATATTTTAAAGGAATTATCTCATTAAAAAAAAAATGTTGATGGGAGATGCTGTTCCTTTTAAAAACTAAAACCACTCTATTATACAGCATATATTCTTACATTAGTTGTATACTATAAATAGCTAAGTTTTTTTTGTTGCTCTGTTATTTTTACGTAGTAAGCTTCTGCTTTTGCTGTTTCCTGAATGCTCAGTATTTAGTTTTATTCTTGTTGAGGTTCTTGTAAAACTGTAATTATGTGACAGCCTTTTTCCTTTTGCTTTGTTTCCTGTCCCCTTATCACTTGAGGAAAATAAGGAAACAAAAATAATGACAGCTTGAGAAGTAGTTGTTTAAGAACAGGTTTCTTTGAGATACTTTTCAGTGTTTTGCTGTCTGTCATTAGATAATTGCTATATGCAATTCAAATCTTTGCTGTTTTTATAGAATTGTAGAATGGTCTGAGTTGGATGGAACCTTTAAAAATCATCTAGTTCCAGGAATACCTTCTATTAGATCACATTGCAGAACCCTTACTGTGGGCTCAGTGTTGTATGGTGTTATACAATGCCAGTACAAGGAACAGAATTAGGAAAAAAAAGTGCTAGAACCTTGGAACTGGATGAATGTTGCCCATATTCATAGGCCACGTAGAAATCCCTGTGTCCAAGACATCGTTTTGTATTTTTTAGGGTGGAAACCTTGATGTTTAAATTTGTTACCTATGGTTGCAGTCCTCACTAAGATAATGTGGGCTGTACCACATGTTGTGACTCACTTTCTGTTTTCCTTCAAG
Seq C2 exon
ATGCTGTACCATCAAAAACTGAGACATCTTTGTCTTTGCACACTAAGAAGGAGGCTGTGACAGATGTTCACACAGAAGAACCTTCTGGAACATCTTTGTCAGTTTCATTGCCACCAAATAGTTCCAGAGCAGGATTTGGTGATTCCGTAGAGAATGTGTCCTCATCATCTCTTCCCAAAGACATAACAGGCAGGATTTCCCATGGGTCAGTAAGCATTGTGGAAAGTGTGTCCAAGGAGGAGGCTGTCCTCAGTCATAAGTCTGAGATATTGGAAAACTTGGAATACATAAAATCAGAGGAGAATGAGCTTGAAGATTCTCATGTTAAGTCTTTGGAGCATTCTGATGTCTTGTTGACATTAGATAAAGAACACGAGGGATCACTTAACATCCTTCCAGAGAAAATCCTCCATTCCAAAAACGAACCCTCTCTAAAGGAACCTTGTTGTTTGACTGCGGAAAGCCTTCATGGTGGGAAAGAAGTCTTAGACAAGAGACTGGCAGACAAAGATGCTGTAACTGTCCTAGACGTAGAAGAATCTTCTCACAAACTGAGTATATCAGCAGAGGAAAAAGATTATCCGCTTTCAGAACATCTGTGTAGTCAAAAGGAGTCATCATACATTGAAGACTTTGAAGGATCCTCCTCCAAGAAACAGCCATCAATTGAAGAAGCACTTACTGTGGAAGAATACAAAGATGATTTTGAAGCATCTGTTCTCTCACCTAAAGAGGACACTCAGTCACTGAAAGAGCAGTCCCAGCTCACGCAAACCAGCAGAAGCAGATCCACCAGCCTTGGCAGTGATGGTGAAATCAGTGAATACCTCAGTGACAGATCTCTCTCTCTCTCTGGCAGCGTGCATTCAGATAGGTTATTGGAACTTAAGTCCCCAGCAGAACTTACAAAAAATACTGAATGCAGAGATGTGGAGAAAGATGAGGCCACTGTTCAGTCACCACCACGGCCCTCTGTTTCAGTGATAGAAGAAACTGATAGTTTGCCAAACTTCAGCATAGGTGATAGGGTGCTTGTAAGTAAAGTCCAGCCTGGAACATTGCGATTCAAAGGTGTGACTAAGTTTGCCGAAGGGTTTTGGGCTGGTGTGGAGTTGGATAAGCCTGAAGGGAACAATAATGGAACTTACGATGGTATTAAATATTTTGATTGCAAAGAAAAACACGGTATTTTTGCTCCTCCCCAAAAAATCTCTCACATTACAGAAAGTATTGATAGCCAATTAGATGCACGTGAGTATGAAGACTCATTCTTTGATGACAGACTGGAGAAGAAACCTGAAAATGAGCAGAAAGGCAAAGGAACTTCTAAAACTAGCAAGGAAGATGAAAACCAGAGCAGAGATACAACAGAGACCTGTTCTCAAGATAAAGCTGCTGCAGACACAGCTGTTTCAGAAGCCTCAGCTGGAAAAAGCATCGATGAGGTCTCATTTTCCAAAGCAAATGGCATAAAGGTTTCTGTAGCTGCTGAATCTTCGGCCCAAGAAGAGTCTGTGGTGGCTTATCTGAAGCATGCTGTAACAGAGGAGACCAACCTTCCTCCTTCCATTTCTGATGTTGCTGATAAGATTTCCAGTGTTCAGCTGGATGACTTCTCAGACTTCTTTTCTGAAAAACTGGAGAGACAGAAAACACTGGGGGAAGAATGTTGTGAAAAGTTAAATGATCTCTCTCCCGGAGTTGTGGAGAAGCCTGCAACTCCGCTTCTGGATTTGCTGACAAAAGAAAAGAACCAATTAGAAGCTCAGCTTAAAATACCACTTAGAGAGGAAGAAAAATCCAAAAACCAACTGGAAAAGGTCAGTTTGCTCACAGACAGTCTGCTTAAAGATTTTGTGAAAGATACAGTCAACCAGTTACAGCAAATAAAGAAGGTCAGGAATGAGAAAATCCAGCTCAGCAACCAGGAGCTCTGTGATGCGAAGGAGCAACGCGGTACCCCATTCCAGCAGGTAGAAGGGCAGATTCCTGATGGCCTGGACAATTTTTTTCTAAGTTCGGACTTAGAAGATGACAGAGAAGAACTTTCTTCCCCAGACATGTGCCCCAGACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003955:ENSGALT00000006306:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.499
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0130220=CAP_GLY=WD(100=9.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGAGACAGCTAAAAACTGGA
R:
CAGACTTATGACTGAGGACAGCC
Band lengths:
347-1383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]