MmuINT0034847 @ mm9
Intron Retention
Gene
ENSMUSG00000033671 | Cep350
Description
centrosomal protein 350 [Source:MGI Symbol;Acc:MGI:1921331]
Coordinates
chr1:157708778-157713252:-
Coord C1 exon
chr1:157713170-157713252
Coord A exon
chr1:157710742-157713169
Coord C2 exon
chr1:157708778-157710741
Length
2428 bp
Sequences
Splice sites
5' ss Seq
TTGGTATGT
5' ss Score
7.12
3' ss Seq
ATGGTTTTTTTTTCTTTAAGATT
3' ss Score
8.24
Exon sequences
Seq C1 exon
ATCTGAAACAGCAAAAACTTGGAAATCTGTAACAGAGTCAGAGCGTTCCAGAGGGTCCTTGGCATCCATTGCTGAACATGTTG
Seq A exon
GTATGTTACTGAAAGAAAAAAGTGGTGTAGACATAGTGTAAGGCCTACAGAATTCTACCTCTACAAAAGTGAATTTCTGGGGCTGCAGAGATGGTTGAGCACTTAAGAACATGTAATGTCTTTCCAAGTTAGGTTCTTAGCACTTATCTCAGACTGGTTACTGACAGGATTGGATTGTTGCTTACTCTGAAGAGAAACTCTTGGGCTCAAGTCACCCCTTTACCTTAGAATCCCAAGGGCAGCGTCTGTTGGGAACTTATGTTCCCGCACTCAGTTCCTTTTTTTTTTAAAGCGTGCACCACTTTAATTTCAATACTACTATACAGGCAGAAGTTGGTGAAAGCAGTCTACATAGTGACTTCCAAGCCAGCCTATATCATGTGGTGATTATTTTTGAGGCTAGAGAGATGTCTAGAGAGTTAAGAGCACAGGCTACTCTTCAGTGCATCCATGCCAGGTGACTTAAAACTGCCTGAATGTAACTACAGATCCCAGGATATCTCAAGGGATCTAACACCTTGTATCTGAGCCTTCTTTTGCGGTTCCATCTCCTTAAAATTCAAGCTCATTGTAGTCAATCTCTCATTGAAACTCTCCTCCAATAAATCACGGTAGGGTTTGAGACTATCTGCCATAAAGGCAGAGTCAGCATAAACAGTTATTGGTTTCCTCGGCACTGTTGTGGGATCTTCCTCCTCTCGTTGGGGCCGTGGTGTGCAGAGATGATCCTGTCCAGGATTCATTACCAGGAAGTCATGGCTGGCATCCAGCAAATAGACCTTTCAGTCTACACCTCCTAGGCCAAACCTTCTGGTTACTCAGCCAATCTACTCCATCGTAAACACCCTTGAAGTTATACAGATTGAAGTTGTGCTTCAGAGGGCCAATGTAGAGGTTGTGGTAGGGCCAAGTTACTACCAGGTGCTTCATAAGCTTACGTCGTCTTTTAGTGAAGGCCTCCTTGAACAGTGGCAGGAAAAACACTGAGGGGAGGTCCTTCAGAGCAGAGACAGCCAAGTCTTCATTATTCAGCAGCAACTGGATTGCCAGGTGCTGGAGTGTGGGAAGAGCCTGAAGCTCATCCTGAGAGACTCGGGTAGAAGGATCCAGACACAGACACTGGTGACAGGTCTCCTAGAGCAGTAGGGCGAGGAGGTAACTCCAAGATTCCTATCTCTGTTCTTTTTAAGCCAGTTTTTATTGTCCCACATTTCTGATAAAAAGGGAGACATGAAAATCAAATAGCTGCATACTATTAACATCTTTAAATTCTTCCCTGGTAATTGTTTATCTGTTATATAATGTGATAAATAATCATATGTAGCTCTTTTCAGTTTAACTCAGAGATAACAATTACTAGAAAATGATTATTGAAAATAAAATGTAGTCATATGAAGAAACTAAACTGAGGCAAATAAAAGCTACTTTCCTGCCAGTAACGGTAAAGTAGAGATTTGAATACAAAACCCAATTCCTGAGTTGTTAGCTCATTATATACTTTCTTCTTAATTTGCTACTTTAGCCCTTAAAGTCCTAAATTTTCAGACATAATCTCATATTTTTACATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTGCATACACACACATATTAGAGAACTTAGGGTCTCCAGAAAAATGTGTTACATTTCAAAGCTGTTTTATTGTTTATATTCTGGATGTTTTGCCTACATGTATGCCTGTGCATCACATGTGTGTCTTATGCCTGAGGAGAGAGCATCAGGTCCCCTGGAATTGGAGTTACAGATGGTTTTGAGTTGCCATGTAGGTACTGGGAAGTGAAGCTGGGTCCTCCACGAGAATAGCAAATTCTCCTAACCATTAAGCCATCTCTCTAGCCACCAAACATTTATTTTTTAAGAAGAATAATAGTATATCCCCACCATGTTCTTCTGCTTGAAGACATAACATTCTTTATATAGCCTGCTTTCCCACGGTCATGTTTCCAACGAGCATGTTGAATAATGGTGCCATAAACTTAGTCCCTGTTACTTTATAAATTATTCCAAACTTAAAAATTTTTAACGTTCTATTTATTCTTTTTTTTGTTTTGTTTTGTTTTTGTTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCCTGCCTCTGCCTTCCAAGTGTTGGGATTAAAGTCGTATACCACCACCAGGCACGTTCTATTTATTCTTAATACAGTTTTTTTTAAATAAAAAAATAACCTCATGATAATCAGCGCAAGTCATATTTATTGACCAGAGCTTTCTTAACTGAGAGTTGACTTTCATTTAAATTTTGGGTCTCAGAACTGAAAGGTTGTGATTAAATAATTTTATGGTTTTTTTTTCTTTAAG
Seq C2 exon
ATTCTTCATTATCATGTTCTGAGAGAGCCATATCAGAAAGGTCACTATCTGCATATGCAAAGAGAGGGGTTGAGTTGGACAGCCGGATAGAACATTTGCAAGCCTCATCTCCAGATCTGTCATCTAGAAAAGCACAGACAGAGTCTAGAGATTCTCTTGAAAGCGCACCCTCGTTATCTCCTGTGAAGGAATTAAATGCACCTGATCGGATTTATGATGTGTCAGAGGCTAAGGCTGAAGATACTAGTCAGAAATCAGAAATACAAGAAATAGAGTCCATGAAACTGGAGAGCAGTGAGGTTGAAGATGCCTGCTGTAAGCAGTCAGGCGGATCTGAAGTCCTACTGAAACTAGACCTGGCCTCTGAAACCCTGTCAAGTAAAGAACTTCCCTCAGACTCTGCAAATGTGCAGCAAGACTTAGATAAACCAGCCACAGAAACGTCTCATGAAAAAGAGGAAGCACTGAAAGAGGATCAGTCCAATCACAGTACAGATGACCGCAGTCCAGACATCCAGTCAGCAGGAGGCATCCCTGAGCAAGGATGCAGAGAGAGTGGGGACTCCACATGCTCAGGACAGCTTTCTGTTCCTAAAGAGTCGTCCTACTCTGAAGATTTTGAAGTGTCTTCTTTCAGGAAAGGGATTTCTGCTGACGAGATTAGTAAAGATGACTCTGAGGGGTCCTCACCATCGTCGCTCAGGAAGGACTCTCAGTCTCACAGAGATAGGTCACAGCTCACAAGGAGCTCCAGAAGCAGAGCCACCGGGTCTGGAAGCGATGAGGAGATCAGCGAGTGTCTCGGTGAGAAAAGCCTCTCTGTTCATAGTGGCGTCCACTCGGAAAGGCTGCTGGAGCTCAGGTCACCCACAGAGCTAATGAAGAGTAAGGAGCGCAGCGACGTGGGGCACGAGCAGGGGGGGACTGAGCCCCTTCCCCTGGCTGCCACAGAGGAGCTACTAGATTTCCACATTGGGGATAGGGTGTTGATCGGCAGTGTTCAGCCAGGTACTCTTCGGTTCAAAGGTGAGACTGACTTTGCTAAAGGGTTCTGGGCTGGAGTGGAGCTGGACAAGCCTGAAGGAAACAACAATGGGACCTATGATGGGATTGTGTATTTTGTGTGCAAAGACAAGCATGGTATTTTTGCTCCTCCTCAAAAAATATCTCACCTTCTAGAAAACTTTGATGATACAGACATAAATGAAGATGAAGAGTCTTACTCAGATGAACAGTACCAACCCTATAATCAAGAGCAGAAAGATATAAAATGTCTAAAAGACAGAGAAAACAATATAGCTGAATATTTTTGTGAGAAGTCACTTCCTAGTATGCATAATACAGATGCCTCAGTGGATAAAGATAGAAGCCTTAACATAGAAACAGATACTTCTGAGGTCCTAGAGGTCCATGGTCACCAACAGCCTTCAGTAGATCCTCTGATTTCTTATAAGGAGAACAAAGTCCTTGTTTCTGATGCCACAGAGAGTGTTCCTGCTGCTGCGGGTGCTGCTACTTCAGACAACACGTTTTCTGGAGAATCAAAGCAACAGCAGCTTGCAGAGAAGGAAGAGAACTTTTATTCTCAAGTTTTGGAAAAGCCCTCTACCCCTCTTCTGGATCTTTTAACAAGAGAAAAAAACCAATTAGAAGCTCAGCTGAAGTCATCAATAAGTGAAGAAAAAAAGTCAAAGCAGCAACTAGAGACAGTCAGCTTACTAACAGACAGTTTACTACAAGTCTTTGTGAAAGACACAGTTAGTCAACTACAACAAGTCAAAAAGGCTAGAAATGAGAAAATCCAGCTTAGCAATCAGGAGTTTCTTGACCAAAAGAAAGTACCACCCCAAGACCTACCCCAAAATACTGAAGAACAATCACCCAGTGTTCCAAGTTGCTTTTTAAGGTCTGAATTGGAAGATGAAAAAGAAGAGATTTCTTCTCCTGATATGTGTCCCAGACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033671-Cep350:NM_001039184:33
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.724 A=NA C2=0.669
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0130220=CAP_GLY=WD(100=10.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: