HsaINT0033810 @ hg38
Intron Retention
Gene
ENSG00000135837 | CEP350
Description
centrosomal protein 350 [Source:HGNC Symbol;Acc:HGNC:24238]
Coordinates
chr1:180090714-180094616:+
Coord C1 exon
chr1:180090714-180090796
Coord A exon
chr1:180090797-180092613
Coord C2 exon
chr1:180092614-180094616
Length
1817 bp
Sequences
Splice sites
5' ss Seq
TTGGTATGT
5' ss Score
7.12
3' ss Seq
TGATTTGTTTTTTCTTTAAGATG
3' ss Score
8.63
Exon sequences
Seq C1 exon
ATCTGAAACGGCAAAGAATTGGAAATCACTAACAGAGTCAGAACGTTCCAGAGGATCCCTGGAGTCTATTGCTGAACATGTTG
Seq A exon
GTATGTAACTAGAAAAAATAATTAACTTGTAGCTACATAGTCTAAGGATTTATGCAAAGGCCTACAAAATTCTACCTCTATAGCTTTTTTATTAAAAAGTGAATTTCTTAAGTAGATTATTTAACATTTTAAAGTTACTTTTATATTTTAAAGTGATTTATTGGCTATGTGTAAATTATATGAATCCTTTTTGTTTGTTTTAGTTTTTTGGGTTTTTTTTTTGTTCGAGACAGGGTCTCACTCTGTCACCCAAGCTGGAGTGCAGTGGCATGATCATAGCTTACTACTGCAGCCTTGACCCCCTGGGCTCAAGCAATCCTCCCATCCTAGCCTCCCAAGTAGCCAGGACCAGGATCACAGGCACATGCCACCATGCCCAGCTCATCTTTTTTTTTTTTTTAAGAGACGGGGGGGTCTCACCGTTGTTGCCCAGGCTGGTCTCGAACTCTTGGACTCACGCAGTCCTCCCACCTCAGCCTGGTTGAACATTACCAGCACTTCAGCCAAAGTGGTGAGATTATGGGCATGAGCCACCACACTCAGCTGAATCAGTCTTTATTGTCCAAAATTTATGAGAAAAACCAAAGTATAAAGATTAAATAGCTGAGTATATCATCTGCATCTCTGAATTTCCCCTAACCAGATTTTTAATCTGGTTATATATATTTTCAGCCTAACTATTTCTTAGCTAAATAGCTGTATACATTTTTCAGTTTAACCAAAAGAAAGTTAATTATTAAAAATAAAATGTAGGCTAGGCGCAGCAGCTCACGCCTATAATCCCCACACTTTGAAAGGCTGAAGTAGGCAGGTCACTTGAGCTCAGGAGTTTGAGACCAGCCTGGGCAATATGGTGAAACTCCATCTCTACAAAACATACAAAGTTAGCTGGGCATGGTGGTGCACACCTATAGTCCCAGCTATTTGCAGGGCTGAGGCAGGAAGATCGCTTACACCCAAGCAGTTGAGTCTACAGCGAGTTGTGATCAGCCACTGCACTCCAGCTTGGGTGACAAATTGAGACACTATCTCAAAAAAAAAAAAAAATGTAATTCAGTGAGAAAATAAAACTGAGGTGCAAAGAAACATCAGTGACAAATAGAGATTTGGCCAGGCACAGTGGCTCGTGCCTATAATCCCAGGTACTTAGGAGGCTGAGGCTAAGGATCGCTTGAGCCCAGGTTCAAGGCAACAGGGAGCTGTGACCACTGCACTCCAGCTTAGGTGACAGAGCAGATTCTTGCTCTTACAAAAAAAAAACGATTTGAATTTAAAACTTTTAACTCTTGGTTTGTTAGCTCACTATATTGTACTTTGATCATATTTTGCACGTTTAGCTCTTAAAGTGCTATATTTGCAGAAATAGTTGATCTATTTTCTTTTTAATTCAAGAGCTTAGTTGAAGCTCCTAGGAAAATGTATTCTTTTAGAAGTATATATGGAAGTCTGTTTCTCCTTCACTAGTTTCCTGTTTGAAAAATGTTTGTAATAACCATCATACAATTCTATTTTTGCATGATTTGAGGATGAATGTGCAAAGCAATGGTTCCATCAACTTAGATACATTTTTCTTCACTTTATAAGTTAAGACAGTGCTTAAGAAATTATTCCAAACTTTAGAATTTTCAGTAATTTTAAATGTTGATACAGATGATATTCTCTTAAAAGAAAAACTTATAAAGTAGCCAAAACAGGTCATATTTATTGACTAGAGGGGTTTTTTTCACTAAAATTTGGCTTTTCTCTAAACTTTGGTTCACAAAATTGAAAGATAGTGATTAAATAATTTTGATGTGGTGATTTGTTTTTTCTTTAAG
Seq C2 exon
ATGCTTCACTGTCTGGTTCTGAGAGATCAGTATCAGAAAGGTCTTTATCTGCATATGCAAAGAGAGTAAATGAATGGGACAGTCGAACAGAAGATTTTCAGACCCCATCTCCAGTTCTCAGATCATCAAGGAAAATCAGAGAAGAATCTGGAGATTCTCTAGAAAATGTACCTGCATTACATCTTCTCAAAGAATTAAATGCCACTAGTAGAATTCTTGATATGTCAGATGGCAAGGTTGGAGAATCTAGTAAAAAATCAGAAATAAAAGAAATAGAGTATACAAAATTGAAGAAGAGTAAGATTGAAGATGCCTTTTCTAAAGAAGGTAAATCTGATGTCTTACTGAAATTAGTCCTAGAACAGGGAGATTCATCTGAAATTCTTTCAAAGAAAGATCTTCCTTTAGATTCTGAAAATGTTCAGAAAGACCTAGTTGGATTAGCTATTGAAAATCTCCATAAAAGTGAGGAAATGTTGAAAGAGAGACAGTCAGATCAAGATATGAATCATAGTCCAAACATCCAATCAGGAAAAGACATTCACGAACAAAAGAACACAAAGGAAAAAGATTTGTCTTGGTCAGAACATCTTTTTGCTCCTAAAGAGATACCATACTCTGAAGATTTTGAAGTGTCTTCTTTCAAGAAAGAAATTTCAGCTGAATTGTACAAAGATGATTTTGAGGTGTCATCTTTGCTGTCACTCAGGAAAGACTCTCAGTCTTGCAGAGATAAGCCACAGCCAATGAGGAGCTCTACAAGTGGAGCCACTAGCTTTGGTAGTAATGAGGAAATCAGTGAGTGCCTAAGTGAGAAAAGCCTTTCTATCCATAGCAATGTTCATTCTGACAGGCTGTTGGAACTCAAGTCCCCTACTGAGCTGATGAAAAGTAAGGAGCGCAGTGATGTGGAGCATGAACAGCAAGTTACTGAATCCCCTTCCTTGGCTTCAGTTCCTACTGCAGACGAGTTATTTGATTTCCACATTGGTGATAGGGTGTTGATTGGAAATGTTCAGCCAGGAATTCTTCGATTCAAAGGTGAGACTAGTTTTGCTAAAGGATTTTGGGCCGGAGTGGAGTTAGATAAACCTGAAGGAAATAACAATGGAACATATGATGGTATTGCATATTTTGAGTGCAAAGAAAAGCATGGTATTTTTGCTCCTCCTCAAAAAATATCTCACATTCCAGAAAACTTTGATGACTATGTAGACATTAATGAAGATGAAGACTGTTACTCAGATGAACGATATCAGTGCTATAATCAAGAGCAAAATGATACAGAGGGTCCAAAAGACAGAGAAAAGGATGTCAGTGAATATTTTTATGAGAAATCCCTACCTAGTGTGAATGATATAGAAGCCTCAGTTAATAGAAGTAGAAGCCTTAAAATAGAAACAGACAATGTACAGGACATTTCTGGGGTACTTGAAGCCCATGTTCACCAGCAGTCTTCAGTGGATTCACAGATTTCTTCAAAGGAAAACAAAGACCTCATTTCTGATGCCACAGAAAAGGTTTCCATCGCTGCAGAAGATGACACTTTAGACAATACCTTTTCCGAAGAATTGGAGAAGCAACAGCAGTTTACAGAAGAGGAAGACAACCTATATGCTGAAGCTTCAGAAAAGCTTTGTACACCACTTCTGGATCTTTTAACAAGAGAAAAAAACCAACTGGAAGCCCAGCTGAAGTCATCACTAAATGAGGAAAAAAAGTCAAAACAACAACTGGAAAAAATCAGCTTACTGACAGACAGTTTACTAAAAGTCTTTGTAAAGGACACAGTCAATCAACTACAACAAATCAAAAAAACCAGGGATGAGAAAATCCAGCTTAGCAATCAGGAGCTTCTTGGTGATGACCAAAAGAAAGTAACACCCCAAGACCTATCCCAAAATGTTGAGGAACAGTCGCCAAGTATTTCAGGTTGCTTCTTAAGTTCTGAATTGGAAGATGAAAAAGAAGAGATTTCCTCTCCAGATATGTGTCCCAGACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135837:ENST00000367607:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.965 A=NA C2=0.447
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0130220=CAP_GLY=WD(100=9.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGAGGATCCCTGGAGTCT
R:
AGGCATCTTCAATCTTACTCTTCT
Band lengths:
352-2169
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development