GgaINT0038678 @ galGal3
Intron Retention
Gene
ENSGALG00000006804 | ODF2L
Description
NA
Coordinates
chr8:16718549-16719899:+
Coord C1 exon
chr8:16718549-16718674
Coord A exon
chr8:16718675-16719731
Coord C2 exon
chr8:16719732-16719899
Length
1057 bp
Sequences
Splice sites
5' ss Seq
CGTGTGAGT
5' ss Score
7.42
3' ss Seq
TTGCCTTTTTTTTTCTTTAGAAT
3' ss Score
10.97
Exon sequences
Seq C1 exon
GTAGCTGAAGAATTTGAAAAAATGTCATACTTAGAACAAGCCCTTCAGACAAAAATGCTCATTCTTGAAAATGAAGTGAGAGAGAGACAGGAGGAGAAAAAAGAACTTCTATGTGCATTTCACCGT
Seq A exon
GTGAGTAAATAATACTGCTTTTGACTTATGGAAATGGTGGTGTGATAATTTCTTAATGTTTCTTCTACTAAAAGCCAAACTTTTAATATAGTTGATAACTGTGTGGGGGAACAGCAAATTATTTCAACTTGACAATATGTTTTGTATATTGACACTTCTAGCAGATTTAACAAATGTCCAAGCATATCTTACTATATAACTGGAGTAACACTGAGCTTATATTTCCTATTCAGACCAGTTTTCCAGCAAAATAAAAATCATAAAGTAGGTATGAAACTGTAATTTCCCTCTCAGATTTTTCATTAAGCATAACCATGTCTGAGCAAGTATATTAGATTCATAACCACGTAATAGTATCTTTCTTTTTCCTTTTCTTTCTGTCTGTTCATCTTTCTTTCTTCCTGACTTGTGAAAAAAAATTCTTGCCACACAGGAATTTATGCAAAGCTTTCAGTTGTATGCTGATGTTGCTGTAGTCAGTAACAGAAGGAATGTTTCGTTTTTTCAAATTGACAAGATTTTAAATATCCAGGCTTTGATATGTAGATACTTGCCTTCTTAAACTGTGGTTCTGCTAAATGGGTAATACTCTCTAAAAGCCAAAAAACAAAAAAGGATGGAAGGGAGGTGCTACATCCAATCTGTTCTTTTAACTAATCCAGCAAATCTCAACACATTTTCTATTATTAGAGTGACTTCAGCCAAGGTTTTGATAGAGATTTCTCCAGCAATCCGTGACAATAAGCTACAAAGCTATTTACAATAAATAAGAGACAATACAAGAGTTATCACTCTTAGACCCTCAAAAACAGGACTGTGTACTCTGACTTGAAGTGTTCAAGACTGAAATTGCAGGCCAGCATGTTCAGTTTGGTTTTGACCAAAGGCTTAAGCAAGGCTTCTATATCCTGAGGTCCTTTTGAGTATCTCAAGTCTGTAAAGCCTCTGAAAACTTTAATGGATAAATAAGGCCTCTAAAATGTAGCTACTAACTCTATTACATTATTATTTGATTTGCATTTTATTTCTAAGTTGTGTTGCCTTTTTTTTTCTTTAG
Seq C2 exon
AATGAAAAGCACCATGAGGTATGCTTGAAGGAGCTGGAAAACAGCCTACAAAGGTCAGAAAACAAGAAGCAGAGCATCCAGAACTATGTGCAGTTTTTGAAAACCTCATACATAACAATGTTTGGCTGAATTCTGTAACTTCATTTATTTTAATAATAAAGAAATGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006804:ENSGALT00000038838:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAATGTCATACTTAGAACAAGCCCT
R:
AAATGAAGTTACAGAATTCAGCCA
Band lengths:
254-1311
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]