HsaINT0117841 @ hg19
Intron Retention
Gene
ENSG00000122417 | ODF2L
Description
outer dense fiber of sperm tails 2-like [Source:HGNC Symbol;Acc:29225]
Coordinates
chr1:86812507-86818667:-
Coord C1 exon
chr1:86818542-86818667
Coord A exon
chr1:86814562-86818541
Coord C2 exon
chr1:86812507-86814561
Length
3980 bp
Sequences
Splice sites
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
3' ss Seq
TTTTTTCCTTTTTTCTTTAGAAA
3' ss Score
10.64
Exon sequences
Seq C1 exon
GTTGCTGAAGAAATAGAGAAAATGTCATCTAGAGAGAGTGCTTTACAAATTAAAATATTAGATCTGGAAACTGAGCTTAGAAAGAAAAATGAAGAACAAAATCAACTTGTTTGCAAAATGAACAGT
Seq A exon
GTAAGTATTAGCATGGCTTAACATATTATAAAAGATAACATTTAACATTCTTACCATGTAGAAAATACAAAGTGAGTGAATCAAGTCTATTGTTTTACTGATAATATTAAAAATAACAAGCAATATAAGACATAACAAATAAAAATGTTATGATATGCCAAATAATTTATTATTCTGCCTCTTTGGATGGCATGTATTGCATTGCCATCAAATCTCATCAGGCACTTTCCCTACATATTACTTTTGCAATGACATCTGCTTAATGAAAATTACAGATATAATCTACTTGATTTCATCCTGATATGAATTTTTCATTTTTTAAAGATAAACACAGTGTAAACTATTATTACAAGTGAGTTTTATATCTGTCTTGAATAATGAATATTTTGTTTTAGAAAGTTATAATTTTGTAGTAAACATTCAGTATTGTTAGATATACATGTGAGATGGATGCTTTAGTCCACTCAGCCATGAAATGAAAATACCAAAGTGACTGTGCTTAATTAGTCTTCTGTTTTTTTTCCTGAATACTCATGAAACAGTCAATTGGCATAGAATATTCTGAAAGCTAGCATTACTCATGATTAAATTACGTAATAACTGTCTACTAGATAATGACATAGAGAATAATGATACTGTGTTTTTTCCAGGATCCAGAGACTCCATGAAATCTATTTTTTTAATTCCCAAGTGTCTAAAAAGTTGAAAACCTAAAAGATTCAAGAGTTAAATGATTTTTGGCATGCACAATTTGATTTTATTGCCATCAAAAGTTTCATGACAACTTAGTCAGAACAAAACGTCGATCACCTTTAATTTAGCACAGGCCTTCCATTTATTTCTAAACTTTTTTTTAACTCACCATTTGACTTTCTGATATTGTAAAATGTGTGTGCTGTTTTTTTGTGTAATTGAAGCCTCTGAAAAAATAAATGAGGTGGGTTTTGCTGTAATGTCCCTAGTACTTGGCTAAAGCTAGTAAAATAAATAGATCCCATTCACAATTGCCACAAAGAGAATAAAATACCTAGGAATCCAAATTACAAGGAATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTTAAGGAAATAAGAGAGGACACAAACAAATGGAAAACATTCCATGCTTATGAATAAGATGAAACAAGATCATGAAAATGGCTATACTCCCCAAAGTAATTTATAGATTCAGTGCTATCCCCATCAAGCTACCATTGACTTTCTTCACAGAATTAGAAAAAACTACTTCAAATTTCATATGGAACCAAAAAAGAGCTCACATAACCAAGACAATCCTAAGCAAAAAGAACAAAGCTGTAGGCATCACGCTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAATAGCATGGTACTGGTGCCAAAACAGATATATAGACCAATGGAACAGAACAGAGGCCTCAGAAATAACTCCACACATCTACAACCATCTGCTGTTTGACATACCTGAGAAAAACAAGAAATGGGGAAAGGATTCCCTATTTAATAAATGGTGTTGGGAAAACTGGCTAGCCATATGCAGAAAACTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATTAACTCAAGATGGATTAAAGACTTAAGTGTAAGACCTAAAACCATAAAAACCCTAGAGGAAAACCTAGGCAATACCATTCAGGACATAGGCATGGACGAATACTTCATGACTAAAACACCAAAAGTAATGGCAATAAAAGCCAAGATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTATCATCAGAGTGAACAGGAACCGACAGAATGGGAGAAAATTTTTGCAATCTATCCATCTGACAAAGGGCCAATATCCAGAATCTACAAAGAACTTAAACAAATTTACAAGAAAAAAAACCCCATCAAAAAGTGTGCAAAGAATATGAACAGACACTTCTCAAGAGAAGACATTTAGTCAGCCAAAAAACATATGAAAAAAAGCTCATCACTGGTCATTCAGAGAAATGCAAATCAAAACTACAGTGAGATACCATGTCACACCAATTAGAATGGTGATCATTAAAAAGACAGGAAACAACAGATGCTGGAGAGGATGTGGAGAAATAGGATGCTTTTACACTGTTGGTGGGAGTGTAAATTAGTTCAACCACTGCGGAAGACAGTGTGGCGATTCCTCAAGGATCTAGAACCAGAAATACCATTTGACCCAGCAATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAGAGACACATGCACACGTATATTTATTGTGGCACTATTCACAATAGCAAAGACTTGGAGCCAACCCAAATGCCCATCAATGATAGACTGAATAAAGAAAATGTGGCACATACACCATGGAATACTATGCAGCCATAAAAAAGGATGAGTTCATGTCCTTTGCAGGGACATGGATGAAGCTGGAAACCATCATTCTCAGCAAACTAACACAAGAACAGAAAACCAAACACCGCATGTTCTCACTCATAAGTGGGAGTTGAACAATGAGAATACATGGATACAGGGCAGGGAACATCACACACCAGGGCCTGTCAGGGCGTGGGGGGCTAGGGGAGGGATAACATTAGAAATTCCTAATGTAGATGACGGGTTGATGAGTGCAGCAAACCACCATGGCACGTGTATACCTATGTAACCAACCTGTACGTTCTGTACATGTATCCCAGAACTTAAAGTATAATAAAAATTAAAAAAAATAAAGATCTGATGTTTTGTTAAACCTGATAAGTTTTGTACTAGTAAAATTCTAGAATTCTAAGCATAGATTTAAACATTGCTGAAAAATGAGTTTGTGTGTTTTATGCCTTCCAGGGGACAGTTAAGTGGGCAGTATTTATTTAATATACCTGCTTCAGCCCCATTTGAATTGTAAGCACTCTGAAAGCATGTCTCATAGTCGTCTGTATCCCTGGTGTCTCCCACAGTGCCCTGCTTACCTGCAGGCCTTTTTGTATTTTCTGTCCAAGTACCCTAATAGGGTGGTGCAGAATGGATGTACAGATCTGTGGATGACCTCAGCAGCTTAATCCAAGGCACCCCTCGGGAAGCCTGAAATGTCTTTGAAGTCTTATGTATTATCCTAAAATCCATTGACATTTTATATTCTACCCTACAAAATAAGTATGTGTTACTATTTTTCTTTCCAAATTGTTGAGTAAAACTCATTGTATTCATCCTGTGACTTTGTACTGCCCAGCCTAGCTCATTGTTTTTTACCTGCCTCATTTCCTGAGCTGGGCATTGCTCAGTTTCAGAAGGTATCAGGTGTCATTGAACACCTGATATGAAGGATGTAAAAGTTCTCTCTTTTCTATCTAGGTGTCTATATTTTAATTGGAGGCTAGATGATATTTGCAACCTGTCTTTATCTAAAGCATTGTCAGTGAACTCACCTACTTAGGAATTCATATGCACCTTAGTTAAAAAAAATGTATTGTGGTTTTAAATTTTTTCCTCAACCAGTGTAATATGAAGAATTCTTTTTATTTTTTAAGAGATTCTAAGAAAATGTTCACATTATCAAAACTAGAATTCTATCAACTTTTAAGACATTTAATTATTTTGGAATAAAATGTGAATTTTTAGACAGAAAATGGCAAAAACTAGTATGAAAATATATCATGTTACATGTGAAATTATGACAGTTGTTAACCTATTAAGTTAATCATGTTAAATATGTAATAATTTGGGGCTAAATGAATGTATATTATAAATTATATCAGTGAAGATCAACCATGTGTGTGCTTTAATTATTAATTTTAAAGAGTGAGCTCTAAGAATGAACACATCAGATGTGAGTATTATTTTAAAAAATCAAAAAGAATTATCTAGTTATTGTATATATGTTTTTAATATTATGACTCTGGTCCTTTGGAATGAATGCTATTATTGCTTATCTGTATTTTTTTCCTTTTTTCTTTAG
Seq C2 exon
AAAGCACAACATCAGGAAGTGTGTTTGAAAGAAGTACAAAATAGTCTTGAGAAGTCGGAAAATCAAAATGAGAGTATTAAGAATTATTTACAGTTTCTTAAAACTTCTTATGTAACAATGTTTGAATAAATTGTCAAATTTATTTTCTCTAAGTAGTAGATTTTTATTATGAGTCTAAAATGTGATTGGGTAAAAAAATAAATATACTACCAGTTACATTTTATGATTTATGAGTGGTAGTATTAGAGGTTTTTATGTAAAGATTTTTGAAACATAATTTATCTAACTGAAACTTTAAAATAGGATAGTTGTTACTATTCCTGTTTGCTGGATAATTCTTATTTATCTTTGGTTTAATTTCTTTTAAAATTAAATTGGTTGTTAGAATATTTTTCTCACACATAGACATGGAAGTCAGATTCATTCTTTGTGATGTTTGTAGCCACCATTCAAGTGAATTTGTAGTAAGTCTTGGTCAATATGATTTTAAATAATATATATAATTGTTTTATATTATGATATATAAATGTAAAATATTCTGAATTTTAATTTTTAATAATGGTGTAATTACATACTTTCTAAAGCTACTAAATGTCTCAATATACTACACTTAATATTGTTTCAAGTATATGCTGAGTTGCCATTATAATTTCTGTTAGGTTTTAAGTATACAATTTTAAATCATCGCTATTAAGTACCAACTGCTAATGACAGATGAAAACGTGGTCATGCATTATTTCTTTATAAAGAATAGATATTCAGGCTGTCTTCAATTTGTACTCTCTTTTATTCGTTTTATACTAATGATTATCTGATATTATTATTATTTTAGACATTCTAGAGCCCCTTAGTTAAATAAAAGATTAAAGGGGAACAGCTTATCCCACCCTTTCCATGGCCAACTCATGGGGATGATCAAAATAAGCACTCTTAACATCAAGAAGCTTTAAAATAAGGTCTTTAGTATTGGGATAAAGTTGTCCAAGTTGAAAAAGAACTTGTTTGCTATAATCTCCCACTGTGTGTGCCAAGGCAGGATACTCTAAAAGGGGATGACGTGGTTTACAAAGGATCAAGTAATAGTGACTCCTCTTGGACAATGACTTGAGAGCTGTTAATTCAGAGGAACACTCAGGTCTTAAAAGATCACTAAAAAAGGCAGGTTGTGAACTACACAGTTCCAGCCTATGAACAGAAATATCTCTTTAAGATGTTTTATGCTTTTTTTCTGATCAGAGATGGGGGCCTGGTCCCCTCTGATCCCCTCACTTTTAAGACTGTCATATCATTCACAGATGCTTACTTTCTAGTGATCCAGTTGGTTCGTAGTATTTTTCTTAAAATAGCAAAATACAGAGTGTCAGAACTGGCCACATTTTTTACCCAACAATTGCTAACAAGATTAGTGTCATTTTAAAAAAAATCTTAGTACTCATCATACTAAAAACATGCTTGACCCTTGCAGCCCTTTCTTTACCTCCTAATGCAAAGGGAGCCTTAAATGCCCACATGAAAGGAAAGCAAAGCTCTTGAGTTTTACTCACTAAACTGTAAGCTCCTTAAGGGCCGAAATGTATCTTAGTCATATAAATATCTGGGCACTCAGTTGATGTTTGTGGATAGATGGACAGATGTTGAAAGAGGCAGGTATTCGTACTCCTGTTTTAGATATGAAAAATGTAAGCAAAAAGGATTAATTACCATGGCTGTGGTATGAAACTTGTTTAAAGTTGGCATTTAAATTCAAGTCTGCAACATTAAAGTTCTGTGTACAGAGCCGTTTTCCCACTGTAGCAGCAGCGCAGCAGCAGCGCTGCTATGATTGATTAAGCACTTGCTATGTGCCAGAGTTAATAATTGTGATAATATATTAACTCATTTAATTTTCAGGAAACTAAGACATGGAAAGGTTAGGTAACTTGCCCAAGGTCGCACAGCTAGTAAGTGGCAGACATCCAGAGTCTCTGCTCTGCTCTTAACTCTCACCATACTACCTCTGTATCCATTTCATAAATAAAGATAGTAGTTTCTTATAACAGTAATGCATTTGTCTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000122417-ODF2L:NM_001184766:15
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.343 A=NA C2=0.145
Domain overlap (PFAM):
C1:
PF059116=DUF869=FE(28.1=100),PF127182=Tropomyosin_1=FE(33.3=100),PF041117=APG6=FE(30.1=100)
A:
NA
C2:
PF059116=DUF869=PD(9.6=87.5),PF127182=Tropomyosin_1=PD(11.4=87.5),PF041117=APG6=FE(11.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)