RnoINT0105065 @ rn6
Intron Retention
Gene
ENSRNOG00000014059 | Odf2l
Description
outer dense fiber of sperm tails 2-like [Source:RGD Symbol;Acc:1593831]
Coordinates
chr2:251030100-251032894:+
Coord C1 exon
chr2:251030100-251030225
Coord A exon
chr2:251030226-251032388
Coord C2 exon
chr2:251032389-251032894
Length
2163 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
3' ss Seq
CTGCTTCTCTCCTCATTTAGAAA
3' ss Score
9.48
Exon sequences
Seq C1 exon
GTTTCTGAAGAAGTAGAGAAAATGTCGTCTAGAGAGAGGGCTTTACAAATGAAAATATCAGATCTGGAAACCGAGCTTAGAAAGAAAAATGAAGAACAAAACCAACTTGTTGGCAACATGAGCACT
Seq A exon
GTAAGTATTCGCGTGGCTTGTATGAAAGTGAGCACTAAGCATGCATTCCATGTGTCTTAGTTACTTCTTAACATACAGGCGAGGTGGGCCACGGCTTCCATTGTACAGTGAATGTTAGGAATGACAAATAATCAAAATGCAAAAAGAGATCTCATCCCCCTGCTCTGTGCAGCTTCAGTTACACGGCCTCCGAGCCTCATCAGGCGGCTCCCTGCTCGCCATGTCTGTGTACCAGCTGCTCAGAGAAGGCTCCACTCAGACACTGCTTACATTCTATTTAAATGTTATTCACTTGAGTTTTCATCTTTTAAAGATACATGCAAGTTAAAGAGTTATAAGCTAGACTTTATATGTGCCTTGATTAATGACTATTATATCTTAGAGATATGATTTTAATATTCACCATTATCCAGTGATGGATGCTTTGATCCACTCAGCCGTGAAATGAGAATACCAACTTGGCTGTGTTTAATTAGCCTCTTATATTTTTTCCTGAATATTCATGAAATAGTCTATTGGCATAAGAAGCTGGCATTAGTTGTGCTTAAATTACTTAATAACTGTCTACTTGATAATTACATAGAGAACGCTGGTATTTTATTTTTCCAAGAGTTAGAGACTCTATTAAAACTCCCTTTTCACTTCCAAGTTGTAAGTCTAAAGGGCTCAAAGGTTAAATTATTTTAATATATACTGTTTACTCTTATTGTCTAATAAGTTTGCTGGGTTTCCAAACAAAAGCAAACCAACAGACTCCTCCCCGTCAGGATTCCTGACATTGTAAAATGTGTGTGGTGATCTTTGTGCAGTGGAAGTCCCTGAACGAATAAACCGAGATTGATGGATTTTCTTTTCTATGTTTAGTAGTTTGCTAAAGCTTCTAAAATAAATAGGTTAAGATCTGACGTTAAGCCTGATCATTGTTGTGCTAGTAAACAATCTAGAATTCCGAGCCTAATTTATAAATAGCCAGAAATAAATGAGTTTCCCTTGTGCCTTCCAAGGCACCGAGCTTGGGGAGTAATGCATGCGCATGCGCACACAGCCTGACTGAGTTGTGAGTGCTCAGACAGTCTGAGTCCAGCCCTGGCCACACCACTCTCTCTCTCCAGTGTCTCCCACAGTACATGGTGTACCCTGCAGGACTCTTCACGGTTTGGGCTGTGAGGTGGGGTGGATGCACACTTTGAAGGGTGACCTCACAGCTCCACACCATGGCAACCCTACTGAAGTCACAGCGCCTTTCGGACCTTACTCACTGTCCCAATGCTCATTTGCATTTCCTTTCTGCCCTGCAGTGTGTAACTGTGTAGCTGCTGTTCTCTCCAGATTGATGCGCCATAAAGCCCAGCTCCATTTAGTTGATGACGTGTGCAGTCCAGTGTGCAGTCTAGGGCTTTGCCCCACAATTCCCTGCCTCTCCTGCTGGGCCCTGCTCGGTTTCAGGAAGGACATCACTGTCTGCTGCGAGAAACACAAAGGGACTCTGTTCTTGGTTGTGAGCGTTTCAGCTGGGAACCTGTCTTAGCTAAAGCATTTGCAGTGAGCAGCCCACCTAGAAATCTGTACACCACCAACGTTCAAAATGTGTATGAGTTTATTAAAACTTCTCCCTCAAAGGACATGAATGAAGTTCCTTTTACTGTCTGAAAGAGTTCAGGAGAAAATGTTCATGTTATCAAAGCTGGAGTTCTATCAGTTTTGTAAAACACCTTCCTTTCAGAATGTGTATTCTAATGGTACAGCAGGTTAATGAACTATAGACTTTGGGTCTGGTTAATTTTGGTGTTTGCTGTTTTTACTTGCAAAGTTTTTTTTTTATAATAAAATTTAAGACAGTGAAGGTGTTATGGGATAAAACATATTTTGGCAGAAAAATGGCAAAAAATGGATGAAAAGATGTCACTGTAACATAATAGGATCTAATGACGCTCTAAATAAACTCGTCTTACTCATATCTAATAATTTAGGGCAAAGTTACAGAATACAGTAAACTCAAAATAGAGTGATTAATCACATGTGCTCTAATCACTAAGACACTGCTTTAAAGAAGATGCTATTTAAAATCCTGTGGGAAACTGACGCGTTCAGCTACTGCATATGTGCTGACACTCTTCTTGCATATGGCTGCTGTGTTGATTCTCTGCTTCTCTCCTCATTTAG
Seq C2 exon
AAAGCCCAGCATCAGGATATATGCTTGAAGGAAATACAGCACAGCCTTGAGAAGTCGGAGACTCAAAATGAGAGCATTAAGAATTACTTGCAGTTTCTTCAAATTTCCTACGTAACAATGTTTAGATAAATTGTCGAATCCTGCTGATTGATAAACTTTATGATTTACAGGTTAGCAGTATTAGAATTTGTATGTGAAGATACTTGAGACATAATTTATTATCTAAATGAACTTTAAGAAATAATAGTTCTTATTCTTTTGTGACAGATAGTTTGCATTGAACTCTGGTTTCATTCTTTTTAAAAAAATTATTAATTTTTAAAGTTTTTTTCTCCATACATGCAAAAATCAGAATTATTCCTATGAACCATTGAAGTAAATTTGTAATAACTCTAGACCAATTATGAGCCAAATACATGACTTTAAATAATGTATTTGCTTGTTTTATATTGTAATGCTTTATAAATAAAATATTTCAGAAATTTAATTTTATAACAGTATAACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014059:ENSRNOT00000018905:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.762 A=NA C2=0.167
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]