GgaINT0039325 @ galGal3
Intron Retention
Gene
ENSGALG00000005180 | COL11A1
Description
NA
Coordinates
chr8:11969526-11970492:+
Coord C1 exon
chr8:11969526-11969579
Coord A exon
chr8:11969580-11970384
Coord C2 exon
chr8:11970385-11970492
Length
805 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGC
5' ss Score
9.14
3' ss Seq
TATATAATGTTGTATTTTAGGGA
3' ss Score
9.75
Exon sequences
Seq C1 exon
GGTGAAGATGGTTTCCCAGGATTTAAGGGTGACATGGGCCTTAAAGGTGATCGG
Seq A exon
GTAAGCATTGGCTCATGGCCCATATAATCTTAAAATGTTTAAGTGCTATTATTTTGAAAGGATCAGTGAAGTGAACAAATACATTTACAGTGAAAACAGTTAAAAACTTTTAGCTTAAGTTGTTTTTATTCCCTGCACAAACACAGATTTGCGTCAGATCTCATGAATCAGCAAAGGCACAGTTATAAAGAAGAAGCAAGTGTCAGTCTTTGATATCCTTTTCACTAAACTTCTTCCTAGGGAGTCTCCTTTTCAAGATACCAAGATGTGGTACTGCCTGAAGAAGATTTATCCTGAACAGGGATATTCCCATTTCAACCTAATAGTAGCTTATAAATCTCTGCCAAAATGTACTTTATTATCAATGGATGCTTCTGTCACAGGAAATGTTGCAGAGACAATTTAAAAAAAAACTTATTACAAGAGGCTACTGGCCCATATCTGTTATCTGCATACATAAATAACTGTGATGATGGTATCTATTTAACTTCTTAGATACAAAAATTATTCTAATACCATGAGAGTGCTTTCACAAGAATTTGTGTAGTAATTACTGGAATTCATTAACATTCCTATGAAATTGGAAAGCAGTTTCAAAACCCAGCTCTCTTCAGACAAGGACAACAGCCTCTAACACTTGCACAAGTAAAATTCAGTTTTCATGTTTTTGTATTTATATAATGAACATGAGTAGTGGCATTTTCTTAATCTCCACTTATGTTTGCTGAAAAAATATTTTCAAGTATTTGTAGCTAATGCATGCACACAGTCAATTGCTGCACATTTATATAATGTTGTATTTTAG
Seq C2 exon
GGAGAAGTTGGTCAACCTGGCCCACGAGGAGAAGATGGTCCAGAAGGTCCAAAAGGTCGAGCAGGTCCATCTGGGGACCCAGGTGCTGCTGGTCCAGCTGGGGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005180:ENSGALT00000008321:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]