GgaINT0039598 @ galGal3
Intron Retention
Gene
ENSGALG00000002246 | DENND1B
Description
NA
Coordinates
chr8:2451074-2455879:+
Coord C1 exon
chr8:2451074-2451175
Coord A exon
chr8:2451176-2455788
Coord C2 exon
chr8:2455789-2455879
Length
4613 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGA
5' ss Score
9.46
3' ss Seq
TGTGATTTTTTATTTTTTAGTTT
3' ss Score
9.68
Exon sequences
Seq C1 exon
GGAGAACCTATAACTTTCTGTGAGAATAGTTTTGTGAAGCATCGTTCCAGTACTACAAAACAGTTCCTGGAAACTGCTGTTAATCTTCAACTGTTTAAACAG
Seq A exon
GTATGAGTGGGGTAAAAGACCCAAATTTAATTATTTGCTTTGGAAATACGTCCATATTTAAATATATATCCCTTTCTATCATCTTATGAAACTTCAGGATAAAACACAAGTATTTGTGTACAGGCAGTCATTCTAGTTTCATTCTATTATTAAGATTTCATTTATAGCTTAAAAAAAAAAAAGAAGCAGGGGAAAAAAAGTGAAAGCAACTTCAGGGTGCAGACCCAGGGCAGCTCCTGTTCAGAGCCAGTCAGCAATGCATGTAGGCAAGAAAAATCGTGGATCTCCCAGCTTGATGGTGGAACTTCATTTTCAGCTCCCTTGGCTCATGACCAAAGATCTAAACAGCAAAGTGCTTGCTTAAATTGGACTTCGGTGGCATTTTATTTAAAAACTGGGCTAATATTGTAATTACAACTTTCATTGCTAGGGTTTCTGAAGTAGGCATACAGAGAATGTTGCCAACCCAAGCCATAGGGGTAGTCTGAAGAATATCGTAGCTGATTAAGGAGAACCTGAGACTCAAAGTACTTATTTTCCTGCAGATATCTGGAATGACTGAGGAATGAGAGTTCATGTTAAAGTAATCTAACGGACCCCTTTGAAGATAGACTACCATGATAGATAAGGGAAATTCATTATATTTAGGATTTTCTGGTTTTGAAAAAATGCTTGGTGCTAATCAGAAGTTAATAGTAAAGATTTATGTAGGGATGATAGTCTGTAGAAGCTCCTTCAATTTTACTGCTATATTATATGGTTACAAAATGTAAGTAAAAAATTAATGAAGATATCTGCAACCTGTTGGAGTATCTGGGACAAGAGATTGAAGTGGAAAGAAATAATGGAGCAAGCTGTTTACATTTTGCATATCTTAAGACTTGAAACTTTTTTAGCAAGAAAAATGCTTACAAATGAAGTTTCCAAATTGTTGTTGATTTACTAAGCCTGGTCTTCAGTTGCAGGGAAAATGTTTAACTTCACTTAAATACGGGCTAGTCAGTGTGGCTCTGAACTTACTCATTATGTTTTAATATGCTTGACTACAAATAATCAGTATATAGTTTGTTTATAGCTAGTTTTCCTTTTATTCACACTAAAGGAAATAATATATTACAAAGGATTAGGAAATAGTAACAATTTTGATGGTGTGTGGTTTAATAGTAAACATTTTTTTTTCATTCTCCTACTTTGTGTGATTGTTACTCCCACTTCAGCTAATCCTCAGCCCAGCTGCATCTTTTATAGCTTTTCCCACTGACAAATGAGCTGTTTTCAAGGTTGTTTTCAACAGAATAAACTGTATTCTATTATGTTCCTGAAAATGACTAATTGTTAAGCGGTAAATAATTTTTTTAGAAGCAGAAAATAAGTATATAAAAAAGGTTTGGGTGCTTTTTGCATTGACTGACAAATAAGTTTAACTCATGTCATTTGTTGCTGTGTTTTTTGTTGTTTTTGTTTGTTTGTTTTTGGTGGGGGTATATTTTAAAAACTTCTCTCTGCACTCCACCTCTGTTCTTCTTGGAAATTTATCGAAGTACCAGGAAACCACCATAGGATCATTTCCAGCTTCCACTGTAAACTGTGGAATTCTTCATGTTCGTCACATTCCAGTTATTTTCCTCTTCAGTATAATCCATCTTTACCTTCTGTTGTATTTTGATGTGTATTCTGACAATTATGTCACCAAGTGTATTGGTACATGCCAGTCTTTTGTATGAAAAACAGTAACTAACCTGTAAATAGCATCAGTCCCAACATTTGTCTTTAAATGCTGTTACTGGTGACAGTCGCGGTCTGGTGCTTCCCTTTTATAACATGCTTTTGTGGGCAAGTCCTCATCTGACATAACATTCAGGTACTATTCAGATACTCTGCTTTTACTTCATCTGAGCTAATATTATAAGGCAGATGTGCTATCTTTCAGGTAGATTTCCTTTATCAAGAAAATTGTCAAAGAATATGTGAGAACTTGCTCTTTGATAACTCATTTGATACATCATTCCATTTTCCTATTTACCTTTCTTTGCCCTCTTCAAATCTACCTGAAACATCATCAGACTGCTGAGGGCAAACTGACAGATCAGCACTTATCACATCCTTTGCTTTTTAAGGAATTGTACTGTTACTTCTGCTGTGTTTCGGTCTTCAAGTGTAAGGAATTAATAGTAGTGTGTGTCAAATAGTTCTTTTGAGTGTCCAGGGAAACTATTAATTCATTCATAGAATTAGCATGAATACTAATGTTAGAATACTTCATTAAACAGTATAGTTGTATGAATAATATAATTGGAGCTGCTGTTGTGTGGAAACTCTTTGCTCCACTAAGTTCTTGTTCTTGGTAACTGGTGATTCACTTGGAATTTTTACTGCTCCCTACATTTATTTATATGTTTGGATTTGACTGACAACATCCTCTGCCTTCCCTCTTTAACAGTTGTGCTGCAAAACCTTCAGAGTTTCATATGGTCTATCCTTTATTTTTAGAATTCAAAAACATTTAAGGAGTCTGATAGTTCTCCTTAGTCTGACAAAATCCAGTAGTAGCATCAGTTAGTATTTTTCATTACAAGTGGTAGTCGAGCGTGGTGTCTCTGGATCTGTAAGAGGCTGCATTACTTGAACTGATTTTCCAAAGACTATGGCTTTAAAAATGAGAGAAGAATATGATATAAGGCATGCATGATTCCAAATGCTATTTTTTTCATTTAGTCATTTCAGTGCAACTCATACTGGTAAATGACTTGAAAGTAATGATAGTAATAATATCACTTCCTTTAAATAATTTCAGTTGTTTTTTTTTTTTTTTTTGGACCTATCTATTTTTCAGTATTTCCATTAAATACTCAGTTGAACTGACCTTCTAAAAACTAAAATTCAGCCAGTGTCTCAGCCTGCCATTGACAGAATTTTACCAAACATTGAGTATGTCCATAAATCTTTTGCTAGTTTATGGCATGGAATGAATTCATAACTTTCCCCAAAGAGATAATGCCTTACAGTTCAAAGTATGGCTGTTTTTTCTTTTTTTCTCAGCAGTAGCTAAAGATGTTCTTATCTCTCTTCTCACTGTGAAATAATCCAGTGATCCCAAAGAGGTATGACCATGAACCCAACCTGTTTGGAAAAAGGCCAACTTGGAGTAAAATGAAAAAACAAGGAGTTCAGATGGGAGAGAGAAAGGACTGCTTATCTTTGTGCTTGTCTCATTATTGCTGCTGGAATTTTTCTGTTCTTAGAATGTAATTTGTTCCATGACAATATTGACAGGCATTAGATTGTCACTGACATTGTTTGGATAATCTGTAGTAATATATGACATAACCAAACAATTAATTTTGGCCAATTCTTATGTACTGTTTAGTACCAGCGAATACCTCATATTTCTTGTTAAGAGATGAACTGTGTTTAATTAGGAAAGTGCTTTCTCCCTTTATCTCTCAGTTTTGCATTAGCCTTTTCAAAATAAATAAGGAGGGGCTGTTCCTGGAAGGAATTTTAAACCTTTAAAAATATGCTCATTGTAATTCTTTGAAGCTTGTTAATTCCTGAAAAGAATGTATTCATTTCTTCTGAGAGATCTAATTATTAGTTATCTTATTTTGACTCTTCCTGACTCTATCTTCCAGATAGATTCAAATCCATGTACTCATGCAACTGCAACCTGTACAACAGGATGAGTATTGGAATATGTACCTGTAGGTGCAACTAAATAAGTGTTACTTGCGTTAGAACTTAAAAATTCCATGGTGTCAACCTGAACTGTGCCCAGGGTCTGCCTTGGCATCATGCCTCATGTCATTTTTGCACTTGAGTGAAATGTTCTTCAAGTTAGTTTGCACACTGATGATCAAATCTGTGCTGCTAATGCCACCATTCCTGAAAACAAGCCGCAGCAATTCTCTTTCAGTACAGGCAGTTTTGTTATGATGTCCCCACACTAACTGTCCTTATAAGGTCACTTTCTGTAAAACATATCCATTGGACTTTTATTGGAGCTCGATTAGATGCTGTAGCTTATCATTTCTTTGAAGTGCATGTGGTGAAATGTGTCCAGCTGTTTGTTTTGTGTGCTTCAACAAGTTCTACTTTGGACCCATTGATGTGTAAAGCAGAAAGGGAGGTTTGTTTATCGTTTTCTGTTTACGATAAGAGGTAACCTTAGGACTTCCCAACATAAATCAAGGAATTCTTGTCTGTCTTTAATTGATTATGATAATACGGAGTTATCATAAACGTATGCTAAAATATTTTAATGCCATTATGAAAGCAAGAAGAGCTTGAAAGCAATTGAAAGTAACTCTGAACAAACTGTTGTAAGTACATTGGCTATAAATTTTACAAATTGTTTTTGTAAATGTTGCATTGTACATGTAATTTACTCAGTATACATAGAAGTAGCAGAAACTCCAAGGAAGTACCAGTGATATTTTTGTACAGTATTTTGACATTTCTGCTGTTCTTGGTTGAAAAGTCCATGTAAAATTATATATAATCCACAAGCCGTATGTTATCTTGAACATATAAATTCTGTCATAACATATATACATACCATTATAGCAGTGTAAAGAAATATAAGGACCAACCAAGTGTGATTTTTTATTTTTTAG
Seq C2 exon
TTTATTGATGGTCGACTATCAAAATTAAATGCAGGAAGGGGATTCTCTGATGTCTTTGAAGAAGAAATCACAGCGGGAGGATTTTGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002246:ENSGALT00000003516:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0345514=dDENN=FE(49.3=100)
A:
NA
C2:
PF0345514=dDENN=PD(6.0=12.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]