GgaINT0039598 @ galGal4
Intron Retention
Gene
ENSGALG00000002246 | DENND1B
Description
DENN/MADD domain containing 1B [Source:HGNC Symbol;Acc:HGNC:28404]
Coordinates
chr8:2430182-2435000:+
Coord C1 exon
chr8:2430182-2430283
Coord A exon
chr8:2430284-2434896
Coord C2 exon
chr8:2434897-2435000
Length
4613 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGA
5' ss Score
9.46
3' ss Seq
TGTGATTTTTTATTTTTTAGTTT
3' ss Score
9.68
Exon sequences
Seq C1 exon
GGAGAACCTATAACTTTCTGTGAGAATAGTTTTGTGAAGCATCGTTCCAGTACTACAAAACAGTTCCTGGAAACTGCTGTTAATCTTCAACTGTTTAAACAG
Seq A exon
GTATGAGTGGGGTAAAAGACCCAAATTTAATTATTTGCTTTGGAAATACGTCCATATTTAAATATATATCCCTTTCTATCATCTTATGAAACTTCAGGATAAAACACAAGTATTTGTGTACAGGCAGTCATTCTAGTTTCATTCTATTATTAAGATTTCATTTATAGCTTAAAAAAAAAAAAGAAGCAGGGGAAAAAAAGTGAAAGCAACTTCAGGGTGCAGACCCAGGGCAGCTCCTGTTCAGAGCCAGTCAGCAATGCATGTAGGCAAGAAAAATCGTGGATCTCCCAGCTTGATGGTGGAACTTCATTTTCAGCTCCCTTGGCTCATGACCAAAGATCTAAACAGCAAAGTGCTTGCTTAAATTGGACTTCGGTGGCATTTTATTTAAAAACTGGGCTAATATTGTAATTACAACTTTCATTGCTAGGGTTTCTGAAGTAGGCATACAGAGAATGTTGCCAACCCAAGCCATAGGGGTAGTCTGAAGAATATCGTAGCTGATTAAGGAGAACCTGAGACTCAAAGTACTTATTTTCCTGCAGATATCTGGAATGACTGAGGAATGAGAGTTCATGTTAAAGTAATCTAACGGACCCCTTTGAAGATAGACTACCATGATAGATAAGGGAAATTCATTATATTTAGGATTTTCTGGTTTTGAAAAAATGCTTGGTGCTAATCAGAAGTTAATAGTAAAGATTTATGTAGGGATGATAGTCTGTAGAAGCTCCTTCAATTTTACTGCTATATTATATGGTTACAAAATGTAAGTAAAAAATTAATGAAGATATCTGCAACCTGTTGGAGTATCTGGGACAAGAGATTGAAGTGGAAAGAAATAATGGAGCAAGCTGTTTACATTTTGCATATCTTAAGACTTGAAACTTTTTTAGCAAGAAAAATGCTTACAAATGAAGTTTCCAAATTGTTGTTGATTTACTAAGCCTGGTCTTCAGTTGCAGGGAAAATGTTTAACTTCACTTAAATACGGGCTAGTCAGTGTGGCTCTGAACTTACTCATTATGTTTTAATATGCTTGACTACAAATAATCAGTATATAGTTTGTTTATAGCTAGTTTTCCTTTTATTCACACTAAAGGAAATAATATATTACAAAGGATTAGGAAATAGTAACAATTTTGATGGTGTGTGGTTTAATAGTAAACATTTTTTTTTCATTCTCCTACTTTGTGTGATTGTTACTCCCACTTCAGCTAATCCTCAGCCCAGCTGCATCTTTTATAGCTTTTCCCACTGACAAATGAGCTGTTTTCAAGGTTGTTTTCAACAGAATAAACTGTATTCTATTATGTTCCTGAAAATGACTAATTGTTAAGCGGTAAATAATTTTTTTAGAAGCAGAAAATAAGTATATAAAAAAGGTTTGGGTGCTTTTTGCATTGACTGACAAATAAGTTTAACTCATGTCATTTGTTGCTGTGTTTTTTGTTGTTTTTGTTTGTTTGTTTTTGGTGGGGGTATATTTTAAAAACTTCTCTCTGCACTCCACCTCTGTTCTTCTTGGAAATTTATCGAAGTACCAGGAAACCACCATAGGATCATTTCCAGCTTCCACTGTAAACTGTGGAATTCTTCATGTTCGTCACATTCCAGTTATTTTCCTCTTCAGTATAATCCATCTTTACCTTCTGTTGTATTTTGATGTGTATTCTGACAATTATGTCACCAAGTGTATTGGTACATGCCAGTCTTTTGTATGAAAAACAGTAACTAACCTGTAAATAGCATCAGTCCCAACATTTGTCTTTAAATGCTGTTACTGGTGACAGTCGCGGTCTGGTGCTTCCCTTTTATAACATGCTTTTGTGGGCAAGTCCTCATCTGACATAACATTCAGGTACTATTCAGATACTCTGCTTTTACTTCATCTGAGCTAATATTATAAGGCAGATGTGCTATCTTTCAGGTAGATTTCCTTTATCAAGAAAATTGTCAAAGAATATGTGAGAACTTGCTCTTTGATAACTCATTTGATACATCATTCCATTTTCCTATTTACCTTTCTTTGCCCTCTTCAAATCTACCTGAAACATCATCAGACTGCTGAGGGCAAACTGACAGATCAGCACTTATCACATCCTTTGCTTTTTAAGGAATTGTACTGTTACTTCTGCTGTGTTTCGGTCTTCAAGTGTAAGGAATTAATAGTAGTGTGTGTCAAATAGTTCTTTTGAGTGTCCAGGGAAACTATTAATTCATTCATAGAATTAGCATGAATACTAATGTTAGAATACTTCATTAAACAGTATAGTTGTATGAATAATATAATTGGAGCTGCTGTTGTGTGGAAACTCTTTGCTCCACTAAGTTCTTGTTCTTGGTAACTGGTGATTCACTTGGAATTTTTACTGCTCCCTACATTTATTTATATGTTTGGATTTGACTGACAACATCCTCTGCCTTCCCTCTTTAACAGTTGTGCTGCAAAACCTTCAGAGTTTCATATGGTCTATCCTTTATTTTTAGAATTCAAAAACATTTAAGGAGTCTGATAGTTCTCCTTAGTCTGACAAAATCCAGTAGTAGCATCAGTTAGTATTTTTCATTACAAGTGGTAGTCGAGCGTGGTGTCTCTGGATCTGTAAGAGGCTGCATTACTTGAACTGATTTTCCAAAGACTATGGCTTTAAAAATGAGAGAAGAATATGATATAAGGCATGCATGATTCCAAATGCTATTTTTTTCATTTAGTCATTTCAGTGCAACTCATACTGGTAAATGACTTGAAAGTAATGATAGTAATAATATCACTTCCTTTAAATAATTTCAGTTGTTTTTTTTTTTTTTTTTGGACCTATCTATTTTTCAGTATTTCCATTAAATACTCAGTTGAACTGACCTTCTAAAAACTAAAATTCAGCCAGTGTCTCAGCCTGCCATTGACAGAATTTTACCAAACATTGAGTATGTCCATAAATCTTTTGCTAGTTTATGGCATGGAATGAATTCATAACTTTCCCCAAAGAGATAATGCCTTACAGTTCAAAGTATGGCTGTTTTTTCTTTTTTTCTCAGCAGTAGCTAAAGATGTTCTTATCTCTCTTCTCACTGTGAAATAATCCAGTGATCCCAAAGAGGTATGACCATGAACCCAACCTGTTTGGAAAAAGGCCAACTTGGAGTAAAATGAAAAAACAAGGAGTTCAGATGGGAGAGAGAAAGGACTGCTTATCTTTGTGCTTGTCTCATTATTGCTGCTGGAATTTTTCTGTTCTTAGAATGTAATTTGTTCCATGACAATATTGACAGGCATTAGATTGTCACTGACATTGTTTGGATAATCTGTAGTAATATATGACATAACCAAACAATTAATTTTGGCCAATTCTTATGTACTGTTTAGTACCAGCGAATACCTCATATTTCTTGTTAAGAGATGAACTGTGTTTAATTAGGAAAGTGCTTTCTCCCTTTATCTCTCAGTTTTGCATTAGCCTTTTCAAAATAAATAAGGAGGGGCTGTTCCTGGAAGGAATTTTAAACCTTTAAAAATATGCTCATTGTAATTCTTTGAAGCTTGTTAATTCCTGAAAAGAATGTATTCATTTCTTCTGAGAGATCTAATTATTAGTTATCTTATTTTGACTCTTCCTGACTCTATCTTCCAGATAGATTCAAATCCATGTACTCATGCAACTGCAACCTGTACAACAGGATGAGTATTGGAATATGTACCTGTAGGTGCAACTAAATAAGTGTTACTTGCGTTAGAACTTAAAAATTCCATGGTGTCAACCTGAACTGTGCCCAGGGTCTGCCTTGGCATCATGCCTCATGTCATTTTTGCACTTGAGTGAAATGTTCTTCAAGTTAGTTTGCACACTGATGATCAAATCTGTGCTGCTAATGCCACCATTCCTGAAAACAAGCCGCAGCAATTCTCTTTCAGTACAGGCAGTTTTGTTATGATGTCCCCACACTAACTGTCCTTATAAGGTCACTTTCTGTAAAACATATCCATTGGACTTTTATTGGAGCTCGATTAGATGCTGTAGCTTATCATTTCTTTGAAGTGCATGTGGTGAAATGTGTCCAGCTGTTTGTTTTGTGTGCTTCAACAAGTTCTACTTTGGACCCATTGATGTGTAAAGCAGAAAGGGAGGTTTGTTTATCGTTTTCTGTTTACGATAAGAGGTAACCTTAGGACTTCCCAACATAAATCAAGGAATTCTTGTCTGTCTTTAATTGATTATGATAATACGGAGTTATCATAAACGTATGCTAAAATATTTTAATGCCATTATGAAAGCAAGAAGAGCTTGAAAGCAATTGAAAGTAACTCTGAACAAACTGTTGTAAGTACATTGGCTATAAATTTTACAAATTGTTTTTGTAAATGTTGCATTGTACATGTAATTTACTCAGTATACATAGAAGTAGCAGAAACTCCAAGGAAGTACCAGTGATATTTTTGTACAGTATTTTGACATTTCTGCTGTTCTTGGTTGAAAAGTCCATGTAAAATTATATATAATCCACAAGCCGTATGTTATCTTGAACATATAAATTCTGTCATAACATATATACATACCATTATAGCAGTGTAAAGAAATATAAGGACCAACCAAGTGTGATTTTTTATTTTTTAG
Seq C2 exon
TTTATTGATGGTCGACTATCAAAATTAAATGCAGGAAGGGGATTCTCTGATGTCTTTGAAGAAGAAATCACAGCGGGAGGATTTTGTGGAGGTACAGAATTAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002246:ENSGALT00000003516:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0345514=dDENN=FE(49.3=100)
A:
NA
C2:
PF0345514=dDENN=PD(6.0=11.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]