GgaINT0039602 @ galGal3
Intron Retention
Gene
ENSGALG00000002246 | DENND1B
Description
NA
Coordinates
chr8:2462411-2463379:+
Coord C1 exon
chr8:2462411-2462467
Coord A exon
chr8:2462468-2463268
Coord C2 exon
chr8:2463269-2463379
Length
801 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGT
5' ss Score
10.75
3' ss Seq
GAATCTGTTTTGTTGCATAGGAG
3' ss Score
5.83
Exon sequences
Seq C1 exon
GCAAAAAACCACGCAAGGCAAGGAATAAAAGAAGTGAGGAGTAAGTTGAAACATAAG
Seq A exon
GTACGTAGTGCACTTTTACTCTCTTACCTTGCTTCCTGTATGCTTGAAGCTCATACTTTACAAATCGCATGAGATTTGTGTTTTTAATGACTTTTGAAATATGCTTAGCCCTTTGTTCAACAATACATTTTTCATAACGAGCCCTCTGGCAACTATCTGTCATTCTATGCATCCACTGAATAATCTCTTTATTGTTTGCATATTTTATCATTGAACAACAGAGGTTTTCAAAGGTGCATTAACGGGATGTATGTTTTCATAAAGTTGATTGCTTTGATATCACAATTGTAGCCTTTGCTTCAAGCTGAGAATTTGAGATGGAAGAGCCTTGCAGTGCAAAGTGTTTCAGAAGGTATAGTTCTCTGGATTTTATAGGATATGTGAACAATTGCAGTGTTTAAAAATGAATGAACAGTTTCATTTTACAAAAGTAACATTGCAGGAATATCAGAAAAGATGTTTTGGGCATTTTGCAGCTGCTTTTCCTACTGAAGATTTTATTTCCACTTAGGATTTTTCTGTAGAGAGAAGGAACCATTTTTAAAATATATTTTATTCTATTTTAAGAAAACTTTCAAAAATATTTCCTAGACACTTGAACAATCCATCTTTTAAATGACAATGTTGATGATTTGGCTTCGTGAATAGCTAAATTTGATTTTCTTACTACAGATGGTATTTTCATGACAGTAATAGATTGTGGCAAGATAATTTCGAATGCTTTCTGCATGCATAATATGGAGGATACATTTGCAGATAATGATTATAAATGAAGGAATGCGAATCTGTTTTGTTGCATAG
Seq C2 exon
GAGAATGAGGAAGATTGTCAAACTTGCGGTGCTGTTGCAGTGCAGAGTGCTCCGGTCTACCCGGTGCCTAGTGAGAAAAGAGGGAACTCAGAAAAGCGAAAACTTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002246:ENSGALT00000003516:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.368 A=NA C2=0.622
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]