HsaINT0046696 @ hg38
Intron Retention
Gene
ENSG00000213047 | DENND1B
Description
DENN domain containing 1B [Source:HGNC Symbol;Acc:HGNC:28404]
Coordinates
chr1:197539964-197541015:-
Coord C1 exon
chr1:197540959-197541015
Coord A exon
chr1:197540072-197540958
Coord C2 exon
chr1:197539964-197540071
Length
887 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGT
5' ss Score
9.79
3' ss Seq
GTATATTTTTTCATGTGTAGGAA
3' ss Score
8.67
Exon sequences
Seq C1 exon
GCAAAAAATCATGCAAAGCTGGGACTAAAGGAAGTGAAGAGTAAACTAAAACACAAG
Seq A exon
GTATGTCATATTCATTTTTTTCCATTTTACCTTGATTCTTGTATTAGTTTGAAGTTTATACTTCCAAATTAGAAATTTGTGTTTTTAATGACATTTGAAATATGCTTAGCCCTTTGTTCAAGAATGTATTTTTTATAACAAGCCCTCTGGCAACTATCTGCTCTTCTGTATGCATTCACTGAATAATCTCTTTACTGTTTGAATATTTTATCACAGAACTATGGAAATCTTCAAAGATGTTTTAACAGGATGTATGTTTTCATAAAGTTAATTGCCTTGATATCACAATTGAAGTTCTTGCTTTATGCTAAGAATATTTTTAAAAGATATCTTTTGTGTAGAAGTAACCCAGGAATGCCAGCATTTGTTTTGATAGTCTCATTCCAATAGTAGTTACTTTAAAATGAAGAATGTTCTTAATTTACAAAATATTATGTATGTATTTAAGTTATGAATATTGCAGATATGTAAATATGTGTATATGTGTGTTGATTTTAATTTGTATCTTCACAGATTTTATTATCAGTTATGTTTTGAATTTTTACCTTTGGAGAAAACATACTACTTAAATCTTCCAGTGTAGTGATAGCAAATTATCTTTATATAAATTTTATTCAGATTATTCAAAGTAATCAAAGATTTTTAATTATTTTTATTAAATTAAATTTATCAGTATAAATAATTAAGATCATTAACCTTATTTAATTAAATTTATTAATTTTGATTATAGAAAAATGCATTTTCTTCTTAAATAGATTCTTTACACTTAAAGCTGAAGTGTTATTTTGCTACTTGTATGTATATCAGATACTTTGTTTATTAATCTAATACGTTAGTAATAAAAGGAGTACTTTACAATTATTGCCTGTATATTTTTTCATGTGTAG
Seq C2 exon
GAAAATGAAGAAGATTATGGGACCTGTTCTAGTTCTGTACAATATACACCAGTTTACAAATTACACAATGAAAAGGGAGGAAACTCAGAAAAGCGTAAGCTTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213047:ENST00000620048:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.107 A=NA C2=0.611
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development