MmuINT0048224 @ mm10
Intron Retention
Gene
ENSMUSG00000056268 | Dennd1b
Description
DENN/MADD domain containing 1B [Source:MGI Symbol;Acc:MGI:2447812]
Coordinates
chr1:139142834-139144000:+
Coord C1 exon
chr1:139142834-139142890
Coord A exon
chr1:139142891-139143892
Coord C2 exon
chr1:139143893-139144000
Length
1002 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCGT
5' ss Score
9.49
3' ss Seq
GTACTTTTCTTCATGTATAGGAC
3' ss Score
8.72
Exon sequences
Seq C1 exon
GCAAAGAGTCACGCCAGACTGGGACTAAAGGAGGTGAAGAGCAGGCTGAAACACAAG
Seq A exon
GTGCGTCTGCCTTCTTGGTCTTCGTACTTCCCCCCTGATTTTGTGTGAGTTTGTAGCTCTACAAGCTGAGATTTCTGTTTTGATGGCTTTTATGATATGCTCTTGCTTTGTTCAAGAATGTACTTTTTATAACAAGTCCTCTGACAACTAATTCTCAGCTATTCTGTGTGTGTTCACCAAATAATCCTTGTATTGTTTGCATATTTTATCACAGAATGTGGAGTCCTTAAAAAATACTTTTAGTAGGATGTATGTTTTCATAAAATTGATTGCTTTTGTACTACAATTGAAGCTCTTGCTTCAAGCTGATCTTTTTTAAAAACTAACTTTGGGTTGAAATTATTCAAAAAAATGTCACCATTTGGTTTTATAGGATCATCCCAATAGTAGTTACCACATTGAGGAATATTCCTAATTTATTAAAGATCACATATGATAATTTGATTTTGAATCTATGGGTATTCCAGGTATCATGTGAATGTTTATAGGTCTATATTTATGTTCTTGGTTTATTTACAAATTACATCTTTGCAATTTTATTAATAATTTGTGTTCTGATTTTTTACTTTTGAAGAAAATAAACTACTTAAAAATCTTCCTAGCCAGGCAGTGGTGGCACACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGTCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCTTGTCTGGGGGAAAAGAAAATAATAAAATCTTCCATTCTAGTAATGGTGAACATTTATCTTTATATAAATTTTATTTCAATTCGTCAAAGTATGGATTATTTTTTAATTTAATTAAATCACACTATAGAAAATCATGATTTCCTCAGGATATTCTTTAAAATTATACATATAGTGTTTTTTCTTTTTATGTTTAACAGGCAACCTTATTAATGAAATAACTTTAGTTTAAAAGTGGAGTATTATAAAATAATTGTACTTTTCTTCATGTATAG
Seq C2 exon
GACAATGAGGAAGAGTATGGGACCTGTTCTGGTTTGGTGCAGTATACACCAGTGTACACTTTACACAATGAAAAGGGAGAGAACAGAGAGAAGCACAAGCTTTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056268:ENSMUST00000094505:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.105 A=NA C2=0.500
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types