HsaINT0046696 @ hg19
Intron Retention
Gene
ENSG00000213047 | DENND1B
Description
DENN/MADD domain containing 1B [Source:HGNC Symbol;Acc:28404]
Coordinates
chr1:197509094-197510145:-
Coord C1 exon
chr1:197510089-197510145
Coord A exon
chr1:197509202-197510088
Coord C2 exon
chr1:197509094-197509201
Length
887 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGT
5' ss Score
9.79
3' ss Seq
GTATATTTTTTCATGTGTAGGAA
3' ss Score
8.67
Exon sequences
Seq C1 exon
GCAAAAAATCATGCAAAGCTGGGACTAAAGGAAGTGAAGAGTAAACTAAAACACAAG
Seq A exon
GTATGTCATATTCATTTTTTTCCATTTTACCTTGATTCTTGTATTAGTTTGAAGTTTATACTTCCAAATTAGAAATTTGTGTTTTTAATGACATTTGAAATATGCTTAGCCCTTTGTTCAAGAATGTATTTTTTATAACAAGCCCTCTGGCAACTATCTGCTCTTCTGTATGCATTCACTGAATAATCTCTTTACTGTTTGAATATTTTATCACAGAACTATGGAAATCTTCAAAGATGTTTTAACAGGATGTATGTTTTCATAAAGTTAATTGCCTTGATATCACAATTGAAGTTCTTGCTTTATGCTAAGAATATTTTTAAAAGATATCTTTTGTGTAGAAGTAACCCAGGAATGCCAGCATTTGTTTTGATAGTCTCATTCCAATAGTAGTTACTTTAAAATGAAGAATGTTCTTAATTTACAAAATATTATGTATGTATTTAAGTTATGAATATTGCAGATATGTAAATATGTGTATATGTGTGTTGATTTTAATTTGTATCTTCACAGATTTTATTATCAGTTATGTTTTGAATTTTTACCTTTGGAGAAAACATACTACTTAAATCTTCCAGTGTAGTGATAGCAAATTATCTTTATATAAATTTTATTCAGATTATTCAAAGTAATCAAAGATTTTTAATTATTTTTATTAAATTAAATTTATCAGTATAAATAATTAAGATCATTAACCTTATTTAATTAAATTTATTAATTTTGATTATAGAAAAATGCATTTTCTTCTTAAATAGATTCTTTACACTTAAAGCTGAAGTGTTATTTTGCTACTTGTATGTATATCAGATACTTTGTTTATTAATCTAATACGTTAGTAATAAAAGGAGTACTTTACAATTATTGCCTGTATATTTTTTCATGTGTAG
Seq C2 exon
GAAAATGAAGAAGATTATGGGACCTGTTCTAGTTCTGTACAATATACACCAGTTTACAAATTACACAATGAAAAGGGAGGAAACTCAGAAAAGCGTAAGCTTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213047-DENND1B:NM_001195215:19
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.158 A=NA C2=0.562
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)