GgaINT0041825 @ galGal3
Intron Retention
Gene
ENSGALG00000008914 | NRAP
Description
NA
Coordinates
chr6:28950132-28952606:-
Coord C1 exon
chr6:28952502-28952606
Coord A exon
chr6:28950237-28952501
Coord C2 exon
chr6:28950132-28950236
Length
2265 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGC
5' ss Score
9.37
3' ss Seq
AAACACTGATTTTTCCTTAGGAT
3' ss Score
7.88
Exon sequences
Seq C1 exon
GTAAAGTATCATCAAACGTACGAAAAAGAAATCAAGGGAAAAGCCAGCCATACAGCTGGAACAGATGTTACTTTTACAAGAGAAAACGTAGATCAATATGGCCAG
Seq A exon
GTATGCAGCATCCGAGAGATCACTGTCATTGCAGATCCTTATGTAGGTTCATTTGGGTTATGGGAGGGTAAGTCCTACTGTGGCAAATCTTATGTGTGTACATGTATGCACTGGACATTTCTAATGCAGTATATTTGTCTATCACTGAAATGTGTTTATGTGTGAAAACTTTTCCATTCCGTTGGAAAGAGTAATACAAACTCAGCTGGGAGAAAATGTGAAAGGGTCATGAAATGATAGAAAGTTAGCTAAAGTAGTAAAGGATGTTTTTCCTGCCATTATTTTAAGAAATCTTAGAAGCTTTGCAGCTCTGAATATGTGCAAGTTCTCTTAGTTGTTGGCTCTTCTACAACTTGTCAGTCTTACAGTTTTGTAGTTCTATGTATGTGGAACCAAATAGGCTTTATTTCTGTTTGTTTTGTCTGTGGCATTCTTCCTGGTTTCATTTCTTTTTAAATGTAATACAATTATTTCTGTGGTCTTCCAAATAGCATCTGAAGTTCTATTCTAATTAAGGTATGCCTCTCCCATGGAAATAGTAGAATTAAATAGAACTAAATACAGCTAAATGGAATTTGAAAGGAACTGAATAATGTTTCTGTATAAAAGGAATTGTATGGTTAGTTTTGTTTCTCTTCCTAACTCCTTATCAGACCTATATTCTTTGGAAGGAAGAGGAAGTATATTGTCCTAAGACGTTTGGGAATTTTACATTTGTTCACTGCTCTGTCCAACCTTACATCTTTGTGATGTGTGAAAAGCAATCCATCCTTGAATAATAAGTTTCTATCTTTTGAGCTCCTACAAGTTTTAGTAAGAATAAACAAATAAAATGAGTTTGAAAAAGTGCTAATTGCATCTTCAAGGATTGGAATGCTTCTATCATTTGAATTAATTTAACTCTTTTTTTTCTTTGAAAGTATCTTTGAAACTTCAGTCACAGACTTCAAATTTAATTTGAGTTTTAATCTTAACAGGCTGGATTCTGATATTTTTATTCAAATAAAAGTGAGCCACTGAAATTAATGGATTTCTCTGAATTAAGTATAACTTAACATGGGTAAAGGTATTGTAATTTTAACAGTCAAGATCATGAGGCTGCATTATACATGTTACACGAGTGCAGATGTGTGTACATGTACATATATAAGGCAATTTAAAGAATTTACTGCATGCTGTTTTATTAATTTTTGAAATACTAGTTAAAAGTTAAAATTAATTATTTGGAACTTTAAGATTATGTTTTGAAATATGAGTGATACTAGAAATGATATAAAGTGTATTTGAGGAAATTGCAAAAAAAGAGAAAATGACAATTTAGTCTGAAAAATTCAGACTCATGAATGTCATTTTAAAAGACTTACTCAGCTGACCAGTCAGGGATATATATATTTTTTTACTTTCCATGCCTGTTTATAGAATAATCTGGATGCAGTTACTATAATTATATTGTTCACAAACATATGATACAGCCTATCATATCCTGTGATACTGATGTTGAACAAAATTACCTACAGTGAATTGTTTTGCATTGAGAAGTCACCAGAGAGATCCTCCAAATATTTATAGTCATTTCTATCTATGCAGTATTCTCTGTGATACTCCTGACGTGCCACAGATTTTTATTTTGTTTTGACTTACATTGGCTCTTTGCCACAAAGAACAATAAAATATAACAAAGAAGACGCATGGCACTATACCTTACTTGTGTGTATACTTATCACATTCTCCCCAAGTCTGGAAAGCTTCGAGTTTAGCTTTCCATAGTTTACCACTGTAGTATCTAGATATTTCTGTTTCTAGAGAAGTATTTTGTTTTAGTTAGTTGTGATATGAGGAATGGCTATGGTGAGGTCAAGAGACTTGTATCAGCTTCCCACACTAAACTTGGAAAGTTTAAGATCTCCTGGCTTCTCAAACCCTTAGATATTCTTCCAGTACTTTTTCAGGCAAATGTATATTAACAAAGACACGATAGGAGATGTTACATCTCTAAGATTTAGGGTAAAATTAAAAGGATGTGTGTAATTATACATTTGAATGCTATGTTGACCACAGCAAATTGCTAACTAAATTTCTCTTGCAGGCACAGTTAATTTGGTGGGTGATTTCATTCTTAAAGTTGATCTTACTTTCTCTTTTGTTAAAAAAGTAATAATAACAAAGTAATGAACTTTACTGCTAGCGAGGACTATGGGGTTTTGTGAAACCATCCGTGACACCACCCTACATGTATGTGATGAATAAACACTGATTTTTCCTTAG
Seq C2 exon
GATTATATGAATGAGTATGAAGAACGCAGAGGGAAAGGAAGCTTTCCTGCTATGATCACTCCAGCTTATCAAAATGCCAAGAAGGCAAATGAATTGGCAAGTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008914:ENSGALT00000014498:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.571 A=NA C2=0.286
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=31.4)
A:
NA
C2:
PF0088013=Nebulin=PU(55.2=45.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]