RnoINT0103070 @ rn6
Intron Retention
Gene
ENSRNOG00000016714 | Nrap
Description
nebulin-related anchoring protein [Source:RGD Symbol;Acc:1306731]
Coordinates
chr1:277166978-277170139:-
Coord C1 exon
chr1:277170038-277170139
Coord A exon
chr1:277167083-277170037
Coord C2 exon
chr1:277166978-277167082
Length
2955 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
GTTTTTGCTTGACTCCTCAGACT
3' ss Score
7.39
Exon sequences
Seq C1 exon
GTGAGGTACCATCAACAATATCACAGAGAAATGAAGGGAGTGGCTAGTCCTGTCGGAGCTGAGGGCACGATGACAAAGGACTCTATAGACCGATGTGGCCAG
Seq A exon
GTATGTGACACTTCTAGGAGCTGGTCTTCTCCAAGGCCAGCTGTTTGTTTCCCACAGCTGTGACAGCCATGAACTTGTGCTCAGAGTTCAGACTTGGTGCAGGCAATATTACAGAGCTCAGCTCATCTGTTTAGGTAACAGATCCCAAGTCCTTAGAAAAGAAAGAAAACCTGTGCTAATGTGGCAGTTTGGCCAGTAAGAAGACATTTCCATCTGTTGGTTGGAAAACTGTTCAAAGGAATCCAATCTGTCGAGTGAAGTCATTACTGCATGAGTTAGATCATCACTGTCAGGACTCAAATGTATGTCTTGAGGGGTTGGGCAGATAGCCTAGTGGGTAAGAGTGCAGGAGGTGTCAGTAGGAGGATTTCAGTTCAAATCTCCACCATCCATGTTTTAAAATAAAAAGAAAGGAAGGAAAGAAGAAAAAAGCTGGGCATTGCATGTGAAACTATAACTTCGGTGCAGGGCAGAGTGGTTGGAAGTGCTGGGATTTACACGCTGTCAGACTAGCTCCAGTTTCAATGAAAGATCCTGTCTCGAAGGAATAAGGTAGAGCAGGATAGAGCAGGATGCTAGAAGTTCTCCTTTGGCCTCTGCAGCCATGCACACCTGCACATATGTGTGTGCGTTCAGAATATACACACACACACACACACACACAGACACACACAGACACACACACACACACACACACACACACACACACCCCAACTAGCAGGAGCTCAGTGTGATGATGTCTTACATCTGTAATCCTACAACTTGGGAGGTGGAGGCAAGGAGGGTTGCCACAATTTCAAGCCTGGGAATCAGGGTGAGTTCAATTCAGTCTGGGCAACATAATGAGATCTTGTCTCAACAAAGAAACAAAACAGAACAGAAAACTCTTGCTGTATTTGGCCAAAAAAAATAGATAAATAAAAATAAATCCAGTCCGCATTTTCACCGTCTTTCCTCCCCTAGTTATAACATACACGTAAATTCATTTGTGCTCACCCAACTTGGAAAACCACAAAGCCCATTAGCAAAGAATCTTAGAAGCTTCCTCCCCTCCCCGCTCCCAAAACATACCCTTTTCACTGATTATGTTTGACCCAGAACACTCAGACAGCCAAGCAGGAAGGAGGGTTTAATCATTTTCATTTAGGGAGAAGGTCGAAAGGAAGTCTGGACCCTAAGTTTGGCCCATAGCTGAAATGTAATTTGGTAGTGTTCTATTGGTTCCTGGTCATTCCAGCATATTGACAGCAATGTCCAGTCTTGATGATAACAAACTCAAGAATCAAGGTGGGTGTTGGGTGGCGCCATCAGCAGCTGTGGCGGGAGCTCAGTCTAGGGTGGCGCTTTGCTGCTTGATTTAGCCTGACTCATTAAGGGCAAGAGTGGGATGGAGTTGAGGCAGGCAGGCGGATACAGGCTGACTATCTGTAGTGCCTTAAATACCACACAACTCATTCTTGCTAATGGCTACACCCATGGGAAAAAGCTGTACTACGCAGATTTGTTATTTACAACCGAGCAATTCCCCTTACAAAAGACACACACACATATACACACACTCACACACACACACACTCAACTCACACACACACACACAAACATACACTCACTCTCACACACACAAACACACACACATACACTCACTCACACACACACTTTAAAAACGAAGCTACCAAAACAAAGCTAGAGATAGAAAACTAACACCGAACAACAAACTTAGATCCTTTTCCTCCTCCAAACTTACCTCCTCTCCCCACCCCTCACCCCCAACTCAAACATTCTGGCAGCCAAGCAAAAACCAAGGGCTCAAGCTGACCAATTTTCATTTTGGTGGCAAGAAGAGGCCGGGCTACTTAGATTTGATCCAAGTATTTTACTTAAGGAAATGCATTTGCTGGAGCCCATCATGGTCTCTTGAAGGACCTCTTGTCTCAGAGGAGGCCCCAGGGAGAGAGCTGTGATCCTGGGGTTCTGAGGACTGTCCCCAGCCCAGAGCAGAGTTTAGATGAAGAAGCAGCTGACTGGGCTCAGGGCAGGTCTGGGATGAAGAACTTGGGACTTCCGAGAGAAGGTGCGACTGCCTCTACTTACCGTGTCCCTTCTCACTCATGGGATGCTAGTTTTGTGAAAGAAGGGTTTTCTTTATGGGAGTTGGGGAAGGAAGGGACGAATTAAAATGAGAATGACAATTCTCATCTTTCAAGACATATTTACCCCCTTCCAGAGACTGATAGCAGCACGAGGCTCCTCATCACAAAGTCACAAAAGGTTTTATTCTACCTGATATCTGGTTACACAACACACTTTGCTGACGGGGAGCAGCATCAGAGATGTCAAATGCACTTCTGCATACATCTGCCATTGTGTCTAAGCAAAGTAATACTTGAGACTAGTAAACCCTTACTATAACAGCATGAGAGTGGGAGAGTCTCTTGACTTATCTGATATTGTGATGATTGATAAGGAGGAGAACGGTCATAGTGACAGGTGTATGTATGTATGTATGTATGCATGCATGTGTGTATGAATGCATGCATGATATAGTGTATGTGTGTATGTATAGTATGTGTATGTATGCATAAAAATGATCATGCATGCTTGCTCATATATATGATATAGTATACATATGCAGGTATGATATAGTTTTTGAATGTATGTATGTGTGTATGTATATATGCATGTATGTATGCTTGCATTATAGTATATTGTATGTATGCATCTATGTATGCTTGTACGTATGATATAGTGTATGTATGTATGTATGTATGTATGAATGATACAGTGGTCCAGGCTCCAAGCTCTATTATCTTATTCACCCCATGTACATCTCTGACAGTCAGTGGAGTGTCCAGCATGGATGAGATTTTCTGCAATCGGTCTCTGGGGCTATCACTGCTGCCCCTACCCATGCCAGGAGGGACACGTATTGATCAAAGTTTTTGCTTGACTCCTCAG
Seq C2 exon
ACTTACTCAGAAGAGTGTGAGGAACATAGGGGAAAGGGCAGCTTCCCGGCCATGATCACCCCAGCTTATCAGAACGCCAAGAAGGCCAACGAACTTGCTAGTGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016714:ENSRNOT00000038017:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.892 A=NA C2=0.571
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=32.4)
A:
NA
C2:
PF0088013=Nebulin=PU(55.2=45.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]