MmuINT0110626 @ mm10
Intron Retention
Gene
ENSMUSG00000049134 | Nrap
Description
nebulin-related anchoring protein [Source:MGI Symbol;Acc:MGI:1098765]
Coordinates
chr19:56379060-56379917:-
Coord C1 exon
chr19:56379816-56379917
Coord A exon
chr19:56379165-56379815
Coord C2 exon
chr19:56379060-56379164
Length
651 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAT
5' ss Score
7.79
3' ss Seq
GTTTCTGATTGGCTCACCAGGTT
3' ss Score
6.08
Exon sequences
Seq C1 exon
GTGAGGTACCATCAACAATATCATAGAGAAATGAAGGGAATGGCTAGTCCTGTCGGAGCCGAGGGTGGGATGACAAAGGACTCTGTAGACCGATGTGGCCAG
Seq A exon
GTACATGACACTTCCCAGAGCTGGTCTTCTCCAAGGCCAGCTCTTTGTTCCCTACAGCTGTGACAGTGTTGGACATGTGATCAGAGTTTGGACTTGGTGCAGGCAATATACAGAGCTCAGCTCATCTGCTTAGGTGAAGAACCCAAGTCCTTAAAAAAGAAAAAATTAACCTATGCTAATGTGGTGGTTTGGCCAATAAGAGGACGTTTCCATCTGTTCGCATGTATATGTGGTATGGTGTAGGTATGTATGATATAGAGTATGTATATATATATGTATGTATGCATGTATGTATGATATAGTATATTCATCTATGTGTGCGTGCATGTATTTTATAGTGTATGCATCTTTGTATGCATATGTATGTGATATAGTATATGTATGTATGATATAGAGTATGTGTGTATGATACAGTGTATGCATGTATGTATGAAATAATGTATTATAATATAGTGTATGTATGTATGTATGTATGTATGTATACACATATGTATGATATAGTGGTCCAGGCTCCAAGCTCTAGTATCTTATTCACCACATGTACATCTCTGGATGAGCTTTTCTGAGATCAGTCTCTGGGGTTATCACTGCTGACCCCACCCGTGCCAGGAGGGACACATTACTGATCAAAGTTTCTGATTGGCTCACCAG
Seq C2 exon
GTTTACTCAGAAGAGTGTGATGAACCCAGAGGAAAGGGCAGCTTCCCGGCCATGATCACCCCAGCGTATCAGAACGCCAAGAAGGCCAATGAACTTGTTAGTGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049134:ENSMUST00000073536:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.866 A=NA C2=0.409
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=32.4)
A:
NA
C2:
PF0088013=Nebulin=PU(55.2=45.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGTACCATCAACAATATCATAGA
R:
GTCACTAACAAGTTCATTGGCCT
Band lengths:
206-857
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types