GgaINT0043263 @ galGal3
Intron Retention
Description
NA
Coordinates
chr6:32881186-32881916:+
Coord C1 exon
chr6:32881186-32881358
Coord A exon
chr6:32881359-32881750
Coord C2 exon
chr6:32881751-32881916
Length
392 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TCACCTAATGTGTCCAACAGAGC
3' ss Score
7.27
Exon sequences
Seq C1 exon
CCCTCTTTTGCTTCCCAACCCACATGCGTGCAGTTGTAGAGAGAAGCTATCTCCAGTCACAGGGTTACTCTGTGTGGAATGCTAGCTTGTCTGACCCTTCTTGTAGACCAAAAATTACATCAACCCAGGTTATATTCGACATTCCATACAACAGCTGCGGTACCCGTAGACAG
Seq A exon
GTGAGTGTCAATGTATTTTGGAGATATCTCCAGTTCTGGGCACAGAAACTTAATAGGCAGTTGGAAAACTGTCAAAAATTGCATGGGGCATTGTTGTCTACAAGTATTCAAAACACACCAAAGAAGCATGTCTTTCTGGAGGCTACGGTTAATTAAACATTCCTACTTGTCCTTCTTAGATTTTAAGTAATATCTGTGTTTATTTCAGAGTGATGCTTTAGAGAAGAAAGTGTAGGATAGAGTGAACAATCACATATAGGGTGCTTTGGGTTTTTGAGTATGACACATTCTTTCTGAGTAATACTAGGATCTGACGCATACAGAAGTTTGTACTTCACAGTGTGAACATAACTACATGCAATAATCTTGCACTCACCTAATGTGTCCAACAG
Seq C2 exon
AGCAACAATGAGACATTCACATATTCCAACGTGATAAGGGTATTTGCTTCTGATTCCATCATCAAGAGGAAAAAGGACCTTCACTTGCATGTGAACTGCAAAATGCTCCAGAAGACCTGGGTACAAGCAATGTACATTGCTAACGACAGTGGTGTTACTGATATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023424:ENSGALT00000038697:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=PU(50.5=94.8)
A:
NA
C2:
PF0010018=Zona_pellucida=PD(47.7=94.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTCTTTTGCTTCCCAACCC
R:
TCAGTAACACCACTGTCGTTAGC
Band lengths:
334-726
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]