GgaINT0044700 @ galGal4
Intron Retention
Gene
ENSGALG00000008980 | VWA2
Description
von Willebrand factor A domain containing 2 [Source:HGNC Symbol;Acc:HGNC:24709]
Coordinates
chr6:27280025-27280833:+
Coord C1 exon
chr6:27280025-27280132
Coord A exon
chr6:27280133-27280251
Coord C2 exon
chr6:27280252-27280833
Length
119 bp
Sequences
Splice sites
5' ss Seq
GTGGTAGGT
5' ss Score
7.23
3' ss Seq
AAACTGCTGTCTCTTTTCAGCAC
3' ss Score
9.69
Exon sequences
Seq C1 exon
ACCCTTGTGACTCCCAGCCATGCCAGAATGGGGGTACATGTGTCCCAGAGGGACTGGACAAGTACCACTGCCTGTGCCCAGTGGGATATGGAGGAGGCACACACTGTG
Seq A exon
GTAGGTGTCAACCTGACTTCTTCCTCCTTCCTTCTCAACTGTGTCTTGCCTTGGCAAGTGCCCAACAAGCATACATACAACAAACAACAAGCATACAACAAACTGCTGTCTCTTTTCAG
Seq C2 exon
CACCAAAGCTGAGCCTTGAGTGTGGTGTGGACCTCCTTTTCCTGATGGACAGCTCAGCAGGGGTCACACTGGAGGGATTCCTGCGCTATAAGGCGTTCCTCAAGAGGTTCCTTCAAGCAGTGATGGGCCGGGACTCGCCAGCAAACGTGGGGGTGGCCCAGTACGATACCAGCATCAGGATACCCATTGAAGTAGGACAGCACAAGGATGTGTTTGGTCTCATGAAGAGCATTGATGCTTTGAATTTCAGCGGGGGAGGAACCCTGACGGGCAGAGCCCTGCGGTACGTTGCTCAGCATGGTTTTAGGAGAACCCCGGTGTTTGCAGATGTGCTGGATGACCTCCCACGCGTGGTTGTCTTGCTCACTGACTCCAAGTCCCAAGACCCAGTGGCAGAAGCTGCCAAGTATGCAAGGGACAGAGATCTGTTGTTGATTGGTGTAGGCAGCAGCTTTGTGAGGGCAGAGCTGGCTGAAGTGACTGGCAACCCAAAGCAGACCGTTGTCTACTCAGACCCCCAGGATTTGTTCAACAGGATCCCAGAGCTGCAAAGGAGAATTTGCAGTGTGAACAGTCCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008980:ENSGALT00000014609:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(91.7=89.2)
A:
NA
C2:
PF0009223=VWA=WD(100=88.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGGGGGTACATGTGTCCCA
R:
GATGCTGGTATCGTACTGGGC
Band lengths:
258-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]