MmuINT0174337 @ mm9
Intron Retention
Gene
ENSMUSG00000025082 | Vwa2
Description
von Willebrand factor A domain containing 2 [Source:MGI Symbol;Acc:MGI:2684334]
Coordinates
chr19:56979969-56981452:+
Coord C1 exon
chr19:56979969-56980076
Coord A exon
chr19:56980077-56980879
Coord C2 exon
chr19:56980880-56981452
Length
803 bp
Sequences
Splice sites
5' ss Seq
GTGGTATGT
5' ss Score
7.64
3' ss Seq
TATCACTGTGATTCCAACAGCCC
3' ss Score
7.62
Exon sequences
Seq C1 exon
GCCCCTGTGACTCCCAGCCCTGCCAAAATGGAGGCACGTGCATTCCAGAAGGTGTGGATAGGTACCACTGTCTCTGCCCACTGGCATTCGGAGGGGAAGTCAACTGTG
Seq A exon
GTATGTATACTTGGGATTCCCCAGACTGACTCACTGGGAGCAGGCGAGGCCTGGGTTCATGCTTCCTGTTGTCCCCTGCTCCCTGCTGAGTAGAAAGCAATGGATAGAATATCAACCCACCTTCTTTCCCCATAGCCCACTGATCTGTCATTTGGTGCGGCCTCAGACACTCTGTTAATCCAAATAGTGGCACCCGGCAGAGCTGTCACATAGCTGCTGCCTAATGTCTGAGCATATCTATGGCTTGTTTCACCCCTTCTGAGGAAAAGGAGCAAGAAGGCCTAACTTCTTTTGATTTTAAATCCATGCAGTGAAGATTCTATAAGCCTCGGCTTATGGGGAGCTGTGGTTATGTAAAGTACTTAGCACAGCGCCCAGCACACTCGGTAAGTGACTTACACATGTGTGCGGTGCCTTCATTGGAAATCCATATAGGAAAAGTAAATCGTATATACGTCAAACCTAGGGATGCTTCTAAAAGAAATATAGGAGCGTGTCTCTGTGATCTTAAAAGCTGGCAAAGACATCTCGGACCTCAAGGACAGTGGGAAATAAAGTTGGAGGCTAAACTCATTCTGCTTTATACAAAGCACTTGGACTGTGTCCCTCAGCAAGGTGGCAGGAAGCATTCTACATCCGAGTCTCTGGCAAGCACTGGATACTTAGGGGCTTGAGTCCCTCTGCTCCAGCATCTTTCTGGGAGGTTTCTTGTGCTTGAAGTGGCTTAAAGATATCTAGAGTGGGGTTGGTCTGCACACTGCAGCGGCCCCAGGTGACAGTGCGTATCACTGTGATTCCAACAG
Seq C2 exon
CCCCGAAGCTGAGCCTGGAATGCAGAATCGATGTCCTCTTCCTGCTGGACAGTTCTGCAGGCACCACATTGGGGGGCTTCCGGAGGGCCAAGGCCTTTGTCAAGCGCTTTGTGCAGGCCGTGCTGAGGGAGGACTCCCGAGCCCGCGTTGGGATAGCCAGTTATGGCAGGAATCTAATGGTGGCGGTGCCCGTCGGGGAGTACCAGCATGTGCCGGACCTGATCAGGAGCCTTGACAGCATTCCCTTCAGCGGTGGCCCGACCCTAACCGGGAGTGCCTTGCTCCAGGTGGCAGAGCACGGCTTTGGGAGTGCCAGCAGGACTGGTCAGGACAGGCCACGCAGAGTAGTAGTTCTGCTCACTGAATCACGCTCCCAGGATGAGGTGTCTGGGCCAGCAGCTCACGCAAGGGCTCGGGAGCTACTCCTCCTGGGCGTGGGCAGTGAGATCCTGCAGGCGGAGCTGGTGAAGATCACCGGTAGCCCGAAGCATGTGATGGTCCACACAGACCCTCAGGACCTGTTCAGCCAAATCCCAGAGCTGCAGAGGAGGCTATGCAGCCAGCCACGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025082-Vwa2:NM_172840:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.073
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=86.5)
A:
NA
C2:
PF0009223=VWA=WD(100=89.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCGGAGGGGAAGTCAACTGT
R:
CTGTCCTGACCAGTCCTGCT
Band lengths:
356-1159
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: