RnoINT0163997 @ rn6
Intron Retention
Gene
ENSRNOG00000025581 | Vwa2
Description
von Willebrand factor A domain containing 2 [Source:RGD Symbol;Acc:1562000]
Coordinates
chr1:277723432-277724973:+
Coord C1 exon
chr1:277723432-277723539
Coord A exon
chr1:277723540-277724400
Coord C2 exon
chr1:277724401-277724973
Length
861 bp
Sequences
Splice sites
5' ss Seq
GTGGTATGT
5' ss Score
7.64
3' ss Seq
TATCACTGTGATCCCAACAGCCC
3' ss Score
7.79
Exon sequences
Seq C1 exon
GCCCCTGTGACTCCCAGCCATGCCAAAATGGAGGCACGTGCATTCCAGAAGGTGTGGACAGGTACCACTGTCTCTGCCCACTGGCATTCGGAGGGGAAGTCAACTGTG
Seq A exon
GTATGTATATACCTGGGAGTCCCAAGACTGACTCAGTGGAAGCAGGCAAGGCCTGGCTTTACCCTCCCATCGTCCCCTGCTACCTGCTGAGTAGAAAGCAACTGGTAAAATTTCAACCCACCTCCTTTCCCCGTAGCCCACTGTTCTGTCCTGTGATGCAGCCTCAGGTGCCCTGTGATTAATCCAAATGTCGGCACCCGGCAGGGCTGTCGGGTAGCTGCTGCCTGGTGTCTGAGCACATCTGTGGCTCATTTCCTCCCTTCTGGAAAGACAGGAGCAAGAAGACCTGGCATCTTTTGATTTTAAAGCTGTGCAGTGGAGTTCTATAAGCCTCAGCCCGTGGGGAGAGATGCGAGGTTCTGTAAAGTGCTTAGTGTGTGCCCAGCACACTTACGTCATTTATACAAATGTGCTGGTGCCCTCCTTGCAATCCATATAGGAGAAGTAAACCTTATACATCAAAATGACTCCGTGATTATAGCTATATGTGTAATCAGCGGAACAGGGAAGCTTCTGAAGAAATATAGGGCCATGTTTCCATGACCTTAGAGGCTGACAGAGACAGCTCAGGACTCAAGGGACCTAAGTACAGTGGGAAATGAAGTTGGAGAACAAACTCATGCTCCTTTATAAAGAGCACTTGGACTGTGTCCCTTAGCAGAGGTGGCAAGAAACATTCTGCGTCTGAGTCTCTGAGTGGAGAGCCCTGGACACTTACTCCCAGGGGCACGAGTCTCTTTGCTTCAGCATCTTCTGGGAGGTTTCTTGTGTCTGAAGTAGTCTAAAGGCATCTTGAATGGTATTGGTCTGCAACACCACAGCAGCCCTAGGTGACAGCGTGTATCACTGTGATCCCAACAG
Seq C2 exon
CCCCGAAGCTGAGCCTGGAATGCAGGATCGATGTCCTCTTCCTGCTGGACAGTTCTGCAGGCACCACTCCGGAGGGCTTCCGTCAGGCCAAGGCCTTTGTGAAGCGCTTTGTGCAGGCCGTGCTGAGTGAGGACTCCCGAGCCCGTGTTGGGGTAGCCAGTTACAGCAGGGATCTAATGGTGGCGGTGCCTGTTGGGGAGTACCAGCATGTGCCAGACCTGGTCAGGATCCTTGACAGCATTCCCTTCAGCGGTGGCCCAACTCTGACCGGGAGTGCCTTGCTGCAGGTGACAGAGCATGGCTTTGGGAGTGCCAGCCGGACAGGACAGGACAGGCCACGCAGAGTAGTGGTTCTGCTCACTGAATCACACGCCCAAGATGAGGTGGCTGGGCCAGCAGATCATGCGAGGGCCCGGGAGCTGCTACTCCTGGGCATGGGAAATGAGCTCATGCGGGCAGAGCTGGAGAGGATCACGGGTAGCCGGAAGCATGTGATCATCCACACAGACCCTCGGGACATGTTCAGCCAAATCCCAGAGCTGCAGAGGAGGCTATGTAGCCAACCACGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025581:ENSRNOT00000051834:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.099
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=86.5)
A:
NA
C2:
PF0009223=VWA=WD(100=89.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTCCCAGCCATGCCAAAAT
R:
CGCTGAAGGGAATGCTGTCAA
Band lengths:
352-1213
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]