GgaINT0045277 @ galGal3
Intron Retention
Description
NA
Coordinates
chr7:6872493-6873389:+
Coord C1 exon
chr7:6872493-6872807
Coord A exon
chr7:6872808-6873251
Coord C2 exon
chr7:6873252-6873389
Length
444 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
3' ss Seq
CCATGTTCCTTCCCCTGCAGATT
3' ss Score
11.6
Exon sequences
Seq C1 exon
ACAGGGAGAAGATCCGTGCTGTGGGAGGCAAGGACAGATGCTCAGGCAGAGTGGAGATCTGGCACCACGGCTCCTGGGGGACAGTGTGTGATGACTCATGGGACATGCATGATGCTGAGGTGGTGTGCCGGCAGCTGGGCTGCGGCCCTGCAGTGTCTGCCCTGGCTGAGGCTGCATTTGGGGAGGGTACAGGACTCATCTGGCTGGAGCAAGTGGAGTGCAAAGGGACGGAGCTATCACTGCAGGACTGCTGGGCCCGGCCTGGAGACAGTGGTGTCTGCCGACATAAGGAAGATGTTGGAGTGCATTGCTTAG
Seq A exon
GTGAGTGATGGAGCTGGGCCTTCTTACTCAGGTCCTGCCCACAGTCTTCAGCGAAGCAGAGCAGGGCCCTGGACACTGTCCCTGTCACCCTGCCCAGCCCTGCAGGAGGGACGGTTCAGATGGTACTTGTTCAAGATGAGTACCAGGGGGCTCCCTATTACTGTACACACCCCCTCTCAGCCCTACTCTTCTCCTCTGCAGCTTCACCCAGGATGACAGCATTCCCCCCACAAGCAGGTAAGGCATCCACCCCTGGGGCTGGGTGTAAGGCTGTTAGGGATGGGGAGGGGCTATAATGTACCCAGGAGGATGGGAGCTGCTGCATTACCCAGCCCCTGGCCCCCAACCTCTACTGCCTTGCATGACTGGGCTTAGGGCTGGGATGTACTGTCCCTTTTCTCTCCAAACCCTGATGCATCCACTGCCATGTTCCTTCCCCTGCAG
Seq C2 exon
ATTTCCCCTCAGGTCATCCAACTGGCAGAGGGAGAGTCTCTGTGCCTGTTGTCATTTGCATTATCCTGGGGGCTCTTCTCTGCCTGCTCCTGGCCCTCCTGGCTGGGCAGGTGCAAAGTGCCAAGGCCCAGCGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002213:ENSGALT00000003467:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.181
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=92.5),PF081316=Defensin_3=WD(100=25.5),PF118373=DUF3357=PU(1.5=0.9)
A:
NA
C2:
PF118373=DUF3357=FE(67.6=100)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGGCAGAGTGGAGATCTGG
R:
AGAGCCCCCAGGATAATGCAA
Band lengths:
350-794
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]