GgaINT0045277 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NV85]
Coordinates
chr7:6904400-6905296:+
Coord C1 exon
chr7:6904400-6904714
Coord A exon
chr7:6904715-6905158
Coord C2 exon
chr7:6905159-6905296
Length
444 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
3' ss Seq
CCATGTTCCTTCCCCTGCAGATT
3' ss Score
11.6
Exon sequences
Seq C1 exon
ACAGGGAGAAGATCCGTGCTGTGGGAGGCAAGGACAGATGCTCAGGCAGAGTGGAGATCTGGCACCACGGCTCCTGGGGGACAGTGTGTGATGACTCATGGGACATGCATGATGCTGAGGTGGTGTGCCGGCAGCTGGGCTGCGGCCCTGCAGTGTCTGCCCTGGCTGAGGCTGCATTTGGGGAGGGTACAGGACTCATCTGGCTGGAGCAAGTGGAGTGCAAAGGGACGGAGCTATCACTGCAGGACTGCTGGGCCCGGCCTGGAGACAGTGGTGTCTGCCGACATAAGGAAGATGTTGGAGTGCATTGCTTAG
Seq A exon
GTGAGTGATGGAGCTGGGCCTTCTTACTCAGGTCCTGCCCACAGTCTTCAGCGAAGCAGAGCAGGGCCCTGGACACTGTCCCTGTCACCCTGCCCAGCCCTGCAGGAGGGACGGTTCAGATGGTACTTGTTCAAGATGAGTACCAGGGGGCTCCCTATTACTGTACACACCCCCTCTCAGCCCTACTCTTCTCCTCTGCAGCTTCACCCAGGATGACAGCATTCCCCCCACAAGCAGGTAAGGCATCCACCCCTGGGGCTGGGTGTAAGGCTGTTAGGGATGGGGAGGGGCTATAATGTACCCAGGAGGATGGGAGCTGCTGCATTACCCAGCCCCTGGCCCCCAACCTCTACTGCCTTGCATGACTGGGCTTAGGGCTGGGATGTACTGTCCCTTTTCTCTCCAAACCCTGATGCATCCACTGCCATGTTCCTTCCCCTGCAG
Seq C2 exon
ATTTCCCCTCAGGTCATCCAACTGGCAGAGGGAGAGTCTCTGTGCCTGTTGTCATTTGCATTATCCTGGGGGCTCTTCTCTGCCTGCTCCTGGCCCTCCTGGCTGGGCAGGTGCAAAGTGCCAAGGCCCAGCGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002213:ENSGALT00000003467:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.085
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=92.5),PF081316=Defensin_3=WD(100=25.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGGCAGAGTGGAGATCTGG
R:
AGAGCCCCCAGGATAATGCAA
Band lengths:
350-794
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]