GgaINT0045324 @ galGal3
Intron Retention
Gene
ENSGALG00000009564 | METTL8
Description
NA
Coordinates
chr7:19505287-19506073:+
Coord C1 exon
chr7:19505287-19505478
Coord A exon
chr7:19505479-19506023
Coord C2 exon
chr7:19506024-19506073
Length
545 bp
Sequences
Splice sites
5' ss Seq
GAGGTAACG
5' ss Score
9.65
3' ss Seq
TTTTTGTCTTCTGATCTTAGGTT
3' ss Score
9.78
Exon sequences
Seq C1 exon
GAGAAGGAGATGTTTGAGGAAGGAGAAAAATATTGGAAGAAAAATACTGGAGATGATTCCACTTCTGAAAAAGGATATAATAAAAAACAACCAAAATGTATTGCTGACAGGCCTTGGGGTAAAAGCAACGAGGAAGAAGTTAATGTGCTAGAATCCTTCCCTGGTAGTGATGCCACTTACAGAATATTAGAG
Seq A exon
GTAACGCACTGCAAATGCTCTGTCCATTGTATACAGCTCCACCGACTTACTCAAAAGCCTGATAAAGATGCTTATTGACTATCAAGACAGTAAACAGTTAGAATTTGAACTACTATATTCACTTAAGGCAGAAACTTTCATAGCAACCCAGGACCTGAGCATTGCTTTGCATTTAAAATTTCTTCCAAATCAGAATTAGGTGGTCAGATTCCATTTTCACTGGAAGTTGTGTTTCTAATTTCCTACAGAAAATTCTGTCTCAAAGTGCTTTGTTCTCCATACTTGGCAAATTCTTGCCAAATGGTAATGTTGGATAAAGCTATCTCATTTTCCTATGCAGTTTGAGTGCTGGAGTCTTTCTTAACTTTAGAAAGACATTGAAGAGAAATGTGATCATAGGAGAAGTAATGTGAGAACTGTGGTATGAGCTCTTTATACCTTTTCTGCCTTCGAGTCTAATGGGTCCTACCTACTAACTAATTTAAGACAAAAAGGAATATATTTTATTTGCTCATTTAACTTTTTTTTTTGTCTTCTGATCTTAG
Seq C2 exon
GTTGGTTGTGGTGCTGGAAATAGTGTATTTCCTATTTTGAAAGTTCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009564:ENSGALT00000015575:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.188 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134891=Methyltransf_23=PU(15.3=45.3)
A:
NA
C2:
PF134891=Methyltransf_23=FE(8.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGGAGATGTTTGAGGAAGGAGA
R:
GAAATACACTATTTCCAGCACCACA
Band lengths:
222-767
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]