DreINT0095418 @ danRer10
Intron Retention
Gene
ENSDARG00000017359 | mettl8
Description
methyltransferase like 8 [Source:ZFIN;Acc:ZDB-GENE-041114-19]
Coordinates
chr9:3552744-3553140:+
Coord C1 exon
chr9:3552744-3552976
Coord A exon
chr9:3552977-3553090
Coord C2 exon
chr9:3553091-3553140
Length
114 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCTG
5' ss Score
2.64
3' ss Seq
GTGTTTTGTGTTTTCTGCAGGTG
3' ss Score
13.11
Exon sequences
Seq C1 exon
CCAAATATGACAGAGAAGCTCATAAATACTGGGACCAGTTTTACGAGATGCACCAGAACAAATTCTTCAGGAACCGAAATTGGCTCTTCACTGAATTCCCGGAGCTTCTCCCTCCAGACACGGGCGGGATGTTAATGGCGGAGCAGGAGCAAGGCTTAGAGTCAGTGAACAGAGAAAAGCACGATTATAAGGACACATACCCTGGACATCATGCTGCTTTTAGGATACTAGAG
Seq A exon
GTGCTGCAGTCTAAATACAAACAAGCAAGCACAATTTCTGCATTTCCACAACATAATTCCTGTTCATTGATTAGGGACTGGACTTTATTGTACAGTGTTTTGTGTTTTCTGCAG
Seq C2 exon
GTGGGCTGTGGTGCAGGTAACAGCGTGTTTCCCATCATCAACACCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017359:ENSDART00000008606:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.218 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134891=Methyltransf_23=PU(32.1=96.2)
A:
NA
C2:
PF134891=Methyltransf_23=FE(6.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACCAGTTTTACGAGATGCA
R:
TGATGATGGGAAACACGCTGT
Band lengths:
243-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]