GgaINT0045538 @ galGal3
Intron Retention
Gene
ENSGALG00000008818 | F1NPG2_CHICK
Description
NA
Coordinates
chr7:14889948-14890738:-
Coord C1 exon
chr7:14890561-14890738
Coord A exon
chr7:14890100-14890560
Coord C2 exon
chr7:14889948-14890099
Length
461 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATT
5' ss Score
8.55
3' ss Seq
CTCCGATTTTTGTTTTCCAGAGA
3' ss Score
8.75
Exon sequences
Seq C1 exon
GCTGTGGAGGTGTAGCCATGGGAATGTATAATCTTGACCAGTCTATCAAGGATTTTGCCCATAGTTCCTTCCAAATGGCGCTGTCTAAAGGCTGGCCCCTCTACATGAGCACCAAGAATACCATCCTGAAGAGATATGATGGCCGCTTTAAAGACATCTTCCAAGAGATCTACGACAG
Seq A exon
GTAATTGTGATGGTTGTGTACTTCCTACCACAGTGCATCAGTCTGCAGCAGAAACATGTCGAGTCTTGTGAACTTTTGCAGTTAATTCAGTATTTTCAGACACTTTGCATTAATGGCAAACACCCTTCAGGAGGGCTGTACACCTTTTCTGTCATAGTTTCCCTTGTCCCACAGGACACAGTAGTCCCACAGGACACAGTACTTAAGGCTTTGCTACATCTGGTTATGCTGTTCATCTCCGCTAACAGAGAGCCACAGATTCTCTATGGGTTCTCCCACAATTCTGAACAGACTTGCATTGGCTGTAACAATTGAGGAAGAGGAAAAGAGCAAAGATGATGAAAATTCTTCTGGATTTTTTTTTTTAAATCTCCATACACCTCACTCTGCACACTTACTTGCACAAACTGTGCATCCTGTTTTCATCTGTATATCAGGGTGCTCCGATTTTTGTTTTCCAG
Seq C2 exon
AGAATACAAGTCCCAGTTTGAAGCCAAGAAGATCTGGTATGAACATAGGCTCATTGATGACATGGTTGCTCAGGCCCTGAAATCTGAAGGAGGCTTTGTCTGGGCCTGCAAGAACTATGATGGGGATGTGCAGTCTGACTCTGTTGCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008818:ENSGALT00000014333:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0018015=Iso_dh=FE(15.0=100)
A:
NA
C2:
PF0018015=Iso_dh=FE(12.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTGGAGGTGTAGCCATG
R:
TGCAACAGAGTCAGACTGCAC
Band lengths:
326-787
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]