RnoINT0072851 @ rn6
Intron Retention
Gene
ENSRNOG00000015020 | Idh1
Description
isocitrate dehydrogenase (NADP(+)) 1, cytosolic [Source:RGD Symbol;Acc:2862]
Coordinates
chr9:71888417-71889550:-
Coord C1 exon
chr9:71889373-71889550
Coord A exon
chr9:71888569-71889372
Coord C2 exon
chr9:71888417-71888568
Length
804 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
3' ss Seq
TCTTTGTTTGCTTGTTGTAGGCA
3' ss Score
8.38
Exon sequences
Seq C1 exon
AAGGTGGTGGTGTTGCCATGGGTATGTACAACCAGGATAAGTCAATTGAAGATTTTGCACACAGTTCCTTCCAAATGGCTCTGTCGAAGGGCTGGCCTTTGTATCTAAGCACCAAGAACACTATTCTGAAGAAGTATGATGGACGCTTCAAAGACATCTTCCAGGAGATCTATGACAA
Seq A exon
GTAAGAATTGAGGGCAATAGGGTCTAGCCCTGGGGCAAACCGAGTGAGGGACATCATTAACCCTTACATTGGGTAATGGCAATGAGATTTAGCAGGACTGAACTCTGAGGTGCTCTTAGAAGGTAAATGTCTTCTTAAATAAGGGCCACACATTTATTTTTTTTTTTTTAGTAGGGACCCGGTTATTCAGTGTTTGAATGAAGTAGCCTGTTTATGTTGCAAAGTGCATTTCCGAAGCAGTCCCAGTTTATTTCTCTTAAAATCTTTGCTTGAATTGAAAGGTCTGCTCTAAGATGTTATTTCTCTTCCTTATGTAACAGTTCCCATTTCAGCCACATGTGAGACAAGCTTGTGTTGCTTTAGCCTCCCTGTTAGGGCAAGTGTTCCGATGGGAGCTGTGACTTTGAGGCTGGCCTGGTCTCATGAGACCTATGCTGAAGCATGGAGATCCCTCTTCCTGTGGCCCATCTGCTCCAAGCCTGGGCACTGTTATATTTTTAAAATAAACTGAATTACAGAATCTGATCATTATTGAAAATAGTAGGAAGTAAAGAAGTAGGTGGGAGAATCTGTTTTTCTCTTGTAATTCTTAGACCTTCATTCATAAGAGAGAATAGAATAGTGTTCTGAGAGACAGCCACTTTGAGGGTTCAGGATAGGAGTCTAAGCACTTGTCTGTCCCAAGTTTGTGCTGTATCTACCAAAAATAAGGTTTCCTGTCCTTTGGGGGAGTTGTAAATGGTACTCCTGATAAAACTAATTCTGTTTTATTCTTATTTTCTCTTCTTTGTTTGCTTGTTGTAG
Seq C2 exon
GCAATACAAGTCCAAGTTTGAAGCTCAGAAGATCTGGTATGAACACAGGCTCATAGATGACATGGTGGCCCAGGCTATGAAATCAGAAGGAGGCTTCATCTGGGCCTGTAAGAACTATGATGGTGATGTGCAGTCAGACTCAGTAGCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015020:ENSRNOT00000020322:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0018015=Iso_dh=FE(15.0=100)
A:
NA
C2:
PF0018015=Iso_dh=FE(13.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGTGGTGGTGTTGCCA
R:
GGGCTACTGAGTCTGACTGCA
Band lengths:
327-1131
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]