GgaINT0046665 @ galGal3
Intron Retention
Description
NA
Coordinates
chr7:23550262-23551191:-
Coord C1 exon
chr7:23551111-23551191
Coord A exon
chr7:23550387-23551110
Coord C2 exon
chr7:23550262-23550386
Length
724 bp
Sequences
Splice sites
5' ss Seq
AAGGCAAGT
5' ss Score
3.24
3' ss Seq
CAATCTGGATCGCAATGCAGGCA
3' ss Score
2.99
Exon sequences
Seq C1 exon
GATTCTCTCCATTCCCTGATGGCAACCCTTTTCACTTCCAACCCGTTCTTCATCCGCTGCATCAAACCAAACACAGAAAAG
Seq A exon
GCAAGTCCTTCATCCAGCAGAATGCATGCGTGCGGTGCAGGCACCCATGAGCAAAGACTAAATGGAATAAAAGCAGCTCCCCTTTCTAGTTGTTCTACGGTCGAGGAAAAATGTACCTTCCGACTGATAGGATTAAAAAACCTTCATGCTGAATAAGATGCAGCTTTTCCCACCTCCACGTGTGCTTACAAATCCTGGAAGATCCCAGTGCTGTGGTAGAAGAAGCAGTGACTTCTGTTTGTGGTGCCTGCGGAACGCTGGTTCTGGAATGCACAGCTTGTGTGGTGGGAAGCATCTCCTGCAGCTCCCTGACTCCGAGGCAGAGGAGGTGGATGCTTTGTGAGCAAGTCACTGTGCTTAGAGACAGGCTGGCTCCCGTTGTGCTGTGAACCGTGTCAGGAGGTTCTGCAGCTAAATAGGTTGGGTGGGGAGCCCCAAGCCGATCATTTTCTTTGTGTGTTTTGAAAGCGTGTGTGTGTGTGTGTGATACGGCAGAGAAAAGCCTGCTGGGAGCTGCGTGCCAGAAAGAAATCTGCAGTTTGTCTTTGGTTTTGGCAGTAAAAGGCTGATGGGGTCTTCTGCGTGGCTGCAAAGACAGCTGAGCCAGAGTTATGCATTTTGTACGTGTTAATATATATCATTGCTCTGCTGCCATGAGCTGACGGTGACTGCACTCTAGAGTCTAACTCTTCTGCTGTGTTTTTCAATCTGGATCGCAATGCAG
Seq C2 exon
GCACCGAACCTCTTCAATCCAGACGTGGTTCTCAATCAGCTCCGGTACTCAGGGATGCTGGAGACGGTGAAAGTCCGGCGAGCAGGTTTCCCCATCCGGCGCCTTTTCCAGGACTTTCTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011172:ENSGALT00000018214:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(21.3=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(33.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTCTCTCCATTCCCTGATGGC
R:
CTGCTGAGAAAGTCCTGGAAA
Band lengths:
206-930
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]