GgaINT0046665 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NEA4]
Coordinates
chr7:21462447-21463376:-
Coord C1 exon
chr7:21463296-21463376
Coord A exon
chr7:21462572-21463295
Coord C2 exon
chr7:21462447-21462571
Length
724 bp
Sequences
Splice sites
5' ss Seq
AAGGCAAGT
5' ss Score
3.24
3' ss Seq
CAATCTGGATCGCAATGCAGGCA
3' ss Score
2.99
Exon sequences
Seq C1 exon
GATTCTCTCCATTCCCTGATGGCAACGCTTAGCACTTCCAACCCGTTCTTCATCCGCTGCATCAAACCAAACACAGAAAAG
Seq A exon
GCAAGTCCTTCATCCAGCAGAATGCATGCGTGCGGTGCAGGCACCCATGAGCAAAGACTAAATGGAATAAAAGCAGCTCCCCTTTCTAGTTGTTCTACGGTCGAGGAAAAATGTACCTTCCGACTGATAGGATTAAAAAACCTTCATGCTGAATAAGATGCAGCTTTTCCCACCTCCACGTGTGCTTACAAATCCTGGAAGATCCCAGTGCTGTGGTAGAAGAAGCAGTGACTTCTGTTTGTGGTGCCTGCGGAACGCTGGTTCTGGAATGCACAGCTTGTGTGGTGGGAAGCATCTCCTGCAGCTCCCTGACTCCGAGGCAGAGGAGGTGGATGCTTTGTGAGCAAGTCACTGTGCTTAGAGACAGGCTGGCTCCCGTTGTGCTGTGAACCGTGTCAGGAGGTTCTGCAGCTAAATAGGTTGGGTGGGGAGCCCCAAGCCGATCATTTTCTTTGTGTGTTTTGAAAGCGTGTGTGTGTGTGTGTGATACGGCAGAGAAAAGCCTGCTGGGAGCTGCGTGCCAGAAAGAAATCTGCAGTTTGTCTTTGGTTTTGGCAGTAAAAGGCTGATGGGGTCTTCTGCGTGGCTGCAAAGACAGCTGAGCCAGAGTTATGCATTTTGTACGTGTTAATATATATCATTGCTCTGCTGCCATGAGCTGACGGTGACTGCACTCTAGAGTCTAACTCTTCTGCTGTGTTTTTCAATCTGGATCGCAATGCAG
Seq C2 exon
GCACCGAACCTCTTCAATCCAGACGTGGTTCTCAATCAGCTCCGGTACTCAGGGATGCTGGAGACGGTGAAAGTCCGGCGAGCAGGTTTCCCCATCCGGCGCCTTTTCCAGGACTTTCTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011172:ENSGALT00000018214:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.9=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(6.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTCTCTCCATTCCCTGATGGC
R:
CTGCTGAGAAAGTCCTGGAAA
Band lengths:
206-930
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]