GgaINT0046789 @ galGal3
Intron Retention
Description
NA
Coordinates
chr7:20001674-20001956:-
Coord C1 exon
chr7:20001870-20001956
Coord A exon
chr7:20001690-20001869
Coord C2 exon
chr7:20001674-20001689
Length
180 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGT
5' ss Score
9.81
3' ss Seq
ATAGGATCCTGTATTTCTAGAGA
3' ss Score
2.29
Exon sequences
Seq C1 exon
GAAACACAAGAATACACACGGAATGTTGTTAGATATTGCCTTGAAGCACTTCAGGACTGGTTTGATGCTATCAATTTCGTAGATGAG
Seq A exon
GTATGTATCAATGGATTTAAATGAAATGCTATGAAAGCCTGGTTAAAGTTGTAAGGTAATGTACTTCTGTGTCTGAACCAAACTGTTATTCTTCGTATTGATTGAAAAAGAGTTGCTTTGCTGAACTGAGTTTTGTAGTTAATAGCTGCAGTGTGATGTGATAGGATCCTGTATTTCTAG
Seq C2 exon
AGACTTAATGATTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009671:ENSGALT00000038533:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]