GgaINT0046916 @ galGal4
Intron Retention
Gene
ENSGALG00000012570 | TANC1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:HGNC Symbol;Acc:HGNC:29364]
Coordinates
chr7:36016195-36020832:+
Coord C1 exon
chr7:36016195-36016273
Coord A exon
chr7:36016274-36020698
Coord C2 exon
chr7:36020699-36020832
Length
4425 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTT
5' ss Score
7.51
3' ss Seq
GATGAGAATGCTTCTTTTAGCCT
3' ss Score
1.34
Exon sequences
Seq C1 exon
GTGGTTTGTTACATCTTGGCAATTGAGAAGGAGCATGAAGTTGACATCAATGTCACTGATGCCTTGTGGGGAGAAACAG
Seq A exon
GTATTTCTTTTCTCATATTTTCTCCAATTAGAGCTGCTCATTTAAGAAGAGGGTGGTTTTTTTGTTTCTTGTTGTTTTCTTGCTTTTCTCTGCTTACTGACACCTATCAGTTTTCATAATAAATGAAGTTTGTAGGCATAAGTGCAGAAGTTTTAACTTCTTAAACCTACTCACCTCATGGATTGAAAAGAAGAGTTGCTCTGCATTAGAATCACTATAAACTAGTCACTGTCACTTAAACTGCAGATTGTCCTTGGGAATACAGTGCTTCAAGCTTCAGTGTAGAATTTCATTCAATTATGTATCTGCATACAAACTTTTACTTTCAAAAATCTCATTCATTCACCAGAAATCTAGGCCATTGCCTGCTTCCTGGATAGAGACTGGATGAAAAGATAGGCCTTTGTATGTATGGCAGATACTGGATTATTATAATTTTTTAAAGGGACACAGTAAACTATGCAGCCTGCAGCTGAATATTTTCATGTCTTACTGTGTGAGTAGCACCTCAGTTGAATTTAAATAGATGAGTTTTCACAATGATTTTAGGGAGCCTGTTTTTGAAGAGCTGTCTAAATTCATCTTCCCTTAATGGTTTCTTTTCAAAGTTTTGTACTGAGGCTCTTGCTTAATGAAATGGGAATCTTTACTCCTAAAGTTAGTGCTTGGTTGTGCAGTCATAGCTTGTGATATAGGGGAAGGTCCAAGTCCAGACAGCTATGAGCTGTTGCACTTCTCTGCTCTGAGATACTTTTCCCCAGCTTACAACTTTGTAAAACATCTAGAGTCAAAATAGAGACAGGATGACCATTACGTGAAATATCACTCTTCAGTTATGGAATATAAGAAACTAAAAAAGGACACAACTTTATACGTTGTTTGAGTCTTCGTGTTTTTGGGTGGGTGGGTGGTTGAGCTTCTATTTGCTTTGTACGTTTTGGTTGTTAGCTGTAACTTTTTCTAAATGGGATTCTGGTATGGAACTGCATAGTGATAAAACTTAGAAGTACATGACAGCAAGTCTGAAGAGCGTGTGTTTTGTGAGTGTCTGTTCCAAAGCAGAAAAGTATATCACACCATGAAAAAGCAAGAAAGAACCTCAAAGGTAGTTCCTTTTCATGTCACAATGTGTTCAGGAACAGCTTATTCCTGTTCATGTGTTTGTACTGCTGTTATCTATTTATAATCATAGAATCCGTAGAGTTGGAAGGGACTTCTGAGGGCCATCGAGTCCAACTCCCCTGCAGTGCGCAGGGATACCACAGCTAGATCAGGTTGCTCAGGGCCTGATCCAGCCTCACCTTGAAAGTCTCCAGGGATGGGGCAACCACCGTATCACTGGGCAGCCTGTTTCAGTGCCTCACCACCCTCACTGTAAAAGACTTTTTCCTTTTATCTAACCTAAATCTACCCTCTTAGAGCTTGAAGCCATTTCCCCTTGTTCTATCACCACAGACCCTGCCTGCTAAAGTGTCTGTCCCTTCTTTCCTGTAGCTCCCCTTCAGATATTGAAAGGCCGCTATTATCAGGTCACCTCAGAGCCTTCTCTTCTCCAGACTGCACAGCCCCAGCTCTCAGCCTGTCCTCAGAGGAGAGGCGTTCCATCTCTTGGTTCATATTTTTGGCCCTCCTCTGGACACGCTCCAACAGATCCATGTCTCTCTTGCACTGAGGACTCCACATCTGGATGCAGTGCTCCAGGTGAGGCCTCACCAGCACAAAGCAGAGGGGCAGGATCACCTCCCTGACCTGCTGGCCACGCTGCTTTTGATACAGCCCAGAATGCAGTTGAGTTTCTGGGCTGTGAGAGCACAGTGCTGGCTCACATCCAGCTTCCCATCCACCAGTACCCCCAGGTCCTTTTTATCAGGGTTGCACTCAGTCCTTTCAATCCCCACTTGTATTGGTAATGGGAGTTGCCATGACCCAGGTGCAAGATTTTGCATTTGGTTTTGTTGAACCTCATGAGGTTCCCCTGGCCCCACTGCTCAAGCCTGTTTAGGTCCCTCTGGATGGCGTCCCATCCCTCTGGTGTGTCAACCACACCCCACATCTTGGTGTCATCAGCAAACTTGCTGAGGGTGCACTTGACCCCACTAACAATGTCATTGATTAAGATATTAAAGAATATATGACCCAGCATTGACCCTCTGGGGGACACCACTTGCCGTTGACCTCCATCCAGACATGGAGCCATTGATCACCACTCTCTGAATTAAATCCTGCAGCCAGGTCATTGTCTGTCAGTCTACCCTTCAAATCCATTTCTTTCCTATTTGAAGAGAAGGATGTTGTGGGCTGCTGTGTCAAAGGTCTTACTGACGTCCAGATAGATGACATCAGTCCGTGGTCCATTGATGCTGTGTCCCCATCATAAAAGGCTACTAGGTGGTCAAGCAGGACTTGCCCTTGGTGAAAGCCATGCTGGTTCTCCTGTATCAGCTCTGTCTTCCATGTGCATTAGCATCGCTTCTAAGAGGATATGCTTCACAATCTTCATCGGCACAGTGGTGAGACTGACAGTTCTTCATTAAGTCTTGTGCTGTTTCATCTCATTATGGAGGCTGTTTCAGTAGCACTTTACAGTCTGAGTCGTTTAAAGGGGAAAATAGCTGGAGATCATGCGGCCCATTCCCAATATTTTATCACATTAGTGAAGCTGAAGGCTGTGTCCGTGTGAAATACAGGATCAAGACAAGTTCCATGGCAAATTAAGGGAAATGGAGCAGATAAAAATATACTTGATACATGAAATGGCAGGATGTACAAGTGGAATACTTCTAAGCTTGTTTTCTAAATTCAGTTAGTTTATGCTTTCTAAAACCCATGTTGGTATGCCATACTTTGAAAGATGATCTTTGGAACAAAACATTTTAGAGATGACTCTAACTGGCCTCATTTGTTCTGTACAAATTAGCTGATTTAGAACATTACATATTATGAGCCTATGATTCTGTCATCTGGTATAGAAAAAAAGAATTAAAAATAGTTGCAGGAGGAGTTGCACGGACTGATTTTTTCTTCTGTCCTTACAAGTACGAATGATCTGTCTGAACGCTTCAGTTAGCAGTGTTTTCAGATTGCAGCAGAGGATATTTTGTGTTATTTTGTAAGTAAAGGAATACCAGTTTTCTTTCTGCTTTGATTGAACATCTTTGCTCTCCTCAGTACACAAAAAGACAATTACTAAAATATATCTTTGGAAAAACTCGTGGGATGAAAACTACCGTCTGTGCAAAGCATGATTGGAAACAGTTCAGTGGGTGGATGAATCAGGCTGATATTGCTGGCAAAAGTCATTGATAGGGAAAGTATGAATAGAAGGTAACATGCTCATTTGGAAAGAGGTGTAATACAGCAGAATATCTGGAAGTTAAAATAGAGCTCTTAATTTAAAGCAGTGATGGCTTGCAGAGGGAAATGTTGCACGCAGAGGTGCTGCTAAGTCATGACACAAGCTTGACACTAGGAAGAATTATGACAGAAATGAGTGAAGGCTCTCTATGAGTGTCACCAATGCAAAGGTCATACTACAGAACACTGAAGTAGCAAGTTAAACAAATGCAGAACAAACTTTATTTATAATGTATTCTTTTTATAGATGGTTCAAATTTTTTTTAAATTGTACTTTTTCTCAGGTAATCTTCTAAACTTTCTGTCTTACATTGTACACAGAAACATTCTTTTTTTTCTTACAAGTTACAGTTTCTCTCTAACATTGTTGGCTGCAGATCAAAAATCCGTCAAAGATTATTGTTTTTCTTTCACCTTAATGACTTGTTCTTATAGCATCTGCTCTGCACCAGTTGCTTGTTTAGCTTTTCAGTTAAATTCTTTCCTTCTTTCTTAGAACAGAGTGGGCAGAGCTTTTGCAGAGTACTATATCAGGTGTTTTTCAGTAGAGTAGTTGGAATTCCTGAGCAGGGTTCAGTCATGATGATGTTTAAGCTGACTTGAAGGGTTCTGTAATCTCATGCTTGAATAGAGTTATATTGTTGTTCTAACGTCAATTATATCATAAGCTGAAAAGCTGGTACTCCCTTTGGGAAGGGCCTGCTGGAAAGAGAAGCAGCTTTCTTCTCACAGGAAAAAGAAAGAATGTTAAGGAAAAAGGAGCTGTAACTGCCTCAGAGATAGGCTGGTGGGTTTTCCCAACATTTTCATAAAGATTCTCTTTAACTTACAAGGTATGCAAGTGATGTTATCTGTGAGAATTACCTTCTGATTTACCACAGAATGTCTTTGGGTTACTGGCTTAACCTGATTTTGACTAATCCATTTCAGCCTGAGAGTAGTTAAGAAAATCTTGTGGGGCAGCTGAGTTGGAAAACAAATGGGAGGTCATTAGCACTGATAGAATCCGCGTGTGTCAAAGGATGTGTGAAAACAGCTAAGAGAAGATGCTGATGAGAATGCTTCTTTTAG
Seq C2 exon
CCTTGACAGCTGCTGCAGGAAGAGGAAAACTGGAAGTCTGCGAGTTACTTCTTGAACGTGGAGCAGCTGTGAGCAGAGCTAACAGGAGGGGCGTTCCGCCGCTCTTCTGTGCAGTACGGCAGGGGCACTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012570:ENSGALT00000020527:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(24.8=100)
A:
NA
C2:
PF127962=Ank_2=PD(25.7=60.0),PF127962=Ank_2=PU(10.8=22.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]