GgaINT0046923 @ galGal3
Intron Retention
Gene
ENSGALG00000012570 | TANC1
Description
NA
Coordinates
chr7:38163989-38166235:+
Coord C1 exon
chr7:38163989-38164089
Coord A exon
chr7:38164090-38164887
Coord C2 exon
chr7:38164888-38166235
Length
798 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCG
5' ss Score
10.05
3' ss Seq
CTGGTGTCTTTTTCATACAGAAA
3' ss Score
8.44
Exon sequences
Seq C1 exon
GATTTTGGTTTGGCTGAAGAGTTCGCTACCAAAGCATTGGATTTAAAACCCAAGTCTTACGAAGCCTATTATGCTCGAGCAAGAGCAAAAAGGAACAGCAG
Seq A exon
GTACCGTTTGATTCTGTTCTTAAGTCCACATTCATCTTTTTAAACTTTGTAATGCTTTATATAACTGCTTTTCTTTTCCACTAGTTGTAGTTGGAATTTAGAAAGAAAAAATGATTTTCTTGGTACAGTTTCCATATGTATTAGGTCTCTCTATCAGTCAAAACAAACCAAGCCCAAAAAGCAATATTGAATACTCATTCAGGTAATTATTAGACAGTCCAGAAAGTAGGTAGAAATAAACTGATAGGAAGTGAATTATTTTCGATGTACGAGGGGATAAGGAGAGGTATTCTTTGGAATCATAGAACTGTAGTAGTATTGGGGTGGAAGGGATGCCAAAGCCCCCCTGGCCCCACCCCTGCCATGAACTGACTGCCCCTGACCCCATCTGTGGCCTCGGGCACCTCCAGGGATGAGGCACCCACACTGCTTGGGGCAGTGGTGCCAGGGCAAAGCAGAATAAGAAGTTGACAGGGAGTAGGGTTTAGCTAGTGAAGATAACAGGAAAGCTCATGAAACAGTGCTTCAGTTCCTAGTTGATTTCTGCTGTCTTCCTGATGACTCTTGGGATGCAAGAGGAGGGGAAAGACTTAGGACTAGGTCTGTGCTTCCACTGTAGAACTTCCTGGGTTTGGAGACTATACAGTTCTTATCTTTTCACCACATCTAGCAGGAGATGACAAAACAGAACATCTCTTTGAAAGTGGTGGAGGTGGATATTACTGCTCAATAAGCAGTGCTGAAACTCAAACTTGTCCCAGGTTTTTATTAATAAATTCTGGTGTCTTTTTCATACAG
Seq C2 exon
AAAGCTACTTGCTGCTCTTGCTGACTTACATGAAGCCACAAAGTTGTGTCCTGGCAATCAAGAAATTAAACGTCTCCTGGCTCGAGTAGAAGAAGAATGTAAGCAGTTCCAGAGAACGCAACAACAGAAGCATCAGTGCTCACAGTCAGGACAGCAAATTACCAATTCTGATAATGAGGAGGAGGATGTTATCCAAGGAGTGAATGAGAACTTCCATCTTCAAGAAAAAGAGGAAGAACTGCCACACCCTGATGAATCTGTTTCCTCTCCACAAAGGCTGCAACATTCCTTAGCTACTTCATCATACACTAGAAACCTTCAAGACAGTGTTCAGCAGAAAGTGAGACCTGTGTCCCCTCAAGGCAGAACAGGCAATAAATATCTGAGAGAGCCAGGCTTGATCATGCAGCCAACAAAGCAAGCACAGATTGTAAAAACTAATCAGCACCTGAGCTCCATCCAGCCTGGATCAAAACTGGGAAGCAGTCAATGTAATACAAAGACACAATCGCCTTTTCAGCATCTTTCCCAAAGTCCTGTGCCAGTTCGACACACTAAAATTCAGCATTTGGAGGGGACAAGCGCATTATCAGCTGGAAGTGTTTCCACAGGTGCTAGTTCTGAGCTGTACAATGAGAAGTTCACATCCAGCCAGTGTTCCCATTCACAGCACTCTTTTGCAAAGAAATCTAAAACCACTGATCCATCACCAGCCCCATTTCAAATGAATTTCAGTGAAGCAAGACAGCAAAGTCCTGTACCCAGCACTGTCTCTTCTACTTCTCCACCTAGCAGTATGATTCTTGCCAGCTCAACCAGCAGCTTAACTTCAGTGAGTAGTTCTGCAGATAGTATTAAGGGGCTAGGGCCAGACGTTCGAAGCAAGGAGAACAAAGTTAATCAAGTTCATGGTACTGCTGCTGAACACAGACCTCGCAATACGCCATTTATGGGAATCATGGATAAGACTGCCAGGTTTCAGCAGCAAAATCAGTCCAGTCGCTCTTGGCATTCTCAGGCCTCAGATGGATTATCAACAAATGTTTCTTCAGGGAGCATTCAGTCTTCTAATTTCGAGCAGTTTTCGGTCAAACACTCTCAAACTAAAACTTCCTCTACTGTTACTATCCCGGGAGAGAGCAACCAGAATGGTATGCAAGCTAAAGTACATGAGGAGCTTAGGTGTCAAACAGCTGCCTACTGTCAAGATAATAGAGCACCAAAACAAGTTCTGCATTTATACCCAGATGCGCCATCAAAACAACACTCTCACATCAGTAAGGAAGGTCATTTAAGCCACGTCACCTCTACAAAACCAAAGCGATCATTTATTGAATCAAATGTGTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012570:ENSGALT00000020527:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.873
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(20.0=47.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTTGGCTGAAGAGTTCGCT
R:
TCATCAGGGTGTGGCAGTTCT
Band lengths:
350-1148
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]