BtaINT0145006 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004177 | TANC1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:HGNC Symbol;Acc:HGNC:29364]
Coordinates
chr2:37239777-37241880:-
Coord C1 exon
chr2:37241780-37241880
Coord A exon
chr2:37241170-37241779
Coord C2 exon
chr2:37239777-37241169
Length
610 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCG
5' ss Score
10.05
3' ss Seq
TTGTATCTTTTAAAATAAAGGCA
3' ss Score
2.74
Exon sequences
Seq C1 exon
GACTTCGGCATGGCGGAAGAATTTGCTTCCAAGGCCCTTGAGTTGAAACCAAAGTCCTACGAAGCCTTTTATGCCAGGGCGAGAGCCAAGAGAAGTAGCAG
Seq A exon
GTACCGTCTGGGGTTAGATGGGAGGCTAGTGAAGCCTTCTTGTCTTGCTCTGGCTTCAAAGCTTTGGGGGCTTCTGATCCATGAGCACCACTCAGTGCCTCTCCTCCTCTTTGATTCTGAGTAGGTAGCTTCCAGAAGGCACAGCAGTGGAAATGATTAGCAATGGCTGAGCTTTTACTTTCTCTAGACGTCTCATAACGGTTCCTCCCCTCCACCAGTTGACCTGTACTGCAACATCAAGTTCCTAGCTTAGTCCGTGTTACCAGTCAGCCAGCCAACCAGAGACACGTGGGGAAGGGGGGCGGAGTCAATAGGACGAGTTGCTTGGGGTGGGATGGGGGAGGTGATGTGAAGAGGATTCTAACTCCCCTGCTTTATGCTGAGCTCACCCCCACCATCTGGTCTTTGTAGAGATGCTGGGGCCCTGGAACTGCATGGGTCTGGGTTAGAATTTGGCGCTCCCACTTAGCTGAGTGAGTCTAAGCTAGTTCCATGGGTTCCATCCACACAGAACCCGCACAGAACTCACTCGGCTACCTTTTCAGAGCTGCTTTATGAACAGTTGCATTCAGAGTTCTTTCTTACGTGACTTGTATCTTTTAAAATAAAG
Seq C2 exon
GCAGTTCGTGGCTGCCCTGGCTGACTTGCGGGAAGCAGTGAAGCTCTGTCCCGCCAACCAGGAGATCAGGCGGCTCCTGGCCCGCGTGGAGGAGGAGTGCAAGCAGCTCCAGAGGAGCCAGCAGCAGAAGCAGCAGGCCCCGCCGCCTGCCCCACCCACCGACTCGGACAACGAGGAGTATGCCCCGACGCCCGGCCTGAACGACCACTTTCACCTTGAGGGGGCTGAAGAGGAGGAGACGTCGCCACCGGAAGAAGCCGTTTCCCTCGCTCCCAGACCCCCGCCATCCTCGTCCGCACCCTCCCCGTACATCCGAAACCTTCAGGAAGGGCTCCAGCCCAAGATAAGGCCCGTGTCGCCGCTGCAGAGTCGGCCGGGGGCCGGCAAGGCCCTGAGGGAGGCGGTGGCTCAGCCGGGGCTGACGGTGCAGCCCACCAAGCAGGCGCAGATCGTGAAGACCAGCCAGCACCTGGGCTCCGGACCGGCGGGTGTGAGAAACAGCAGCTCGAAGACGCAGGTCTCTCCTCTGAATCCTCCCCCGAGCCCCATGCCCGGAAGACTGCCCACTGCCCCCGCCGGTAGCAGAAGCCTGCATCTGGAGGGAGCAGCCTCTGGCCCCTTCGGCGATCGGCTGGGGCCCAGCCCCGCAGTCCACCTGCAGCACAGTGAGGGCGACGCTGCGTATCCTTTACCAAGCAAGATAAAAAGTGCAGAGAGGCTTCTGTCTCATGCTGCCGTGGCTGTGGACGTGGTGCCTCTAAACCCAGGGGGGCCAGTGAGCTGCAGCGACACCCGACACCCGACTTCCCTCAGTAGTTCAGGGTCTTCCGGTTCTCCATCGAGCAGCATCAAGATGTCAAGCTCCACCAGTAGTTTGGCTTCAAGCAGCAGTTTCTCGGATGGCTTCAAAGTCCAAGGACCAGATGCTCGAATTAAAGACAAGGTTGGTAGCCAGGTTCCGAGTGGCACAGCTGAGCACAGACCTCGCAATACTCCATTCATGGGCATCATGGATAAGACCGCGAGGTTCCAGCAGCAGAACCACCCCCCTGGCCGCACCTGGCACTGTGCGGTGTCAGAGGGGCTGCTGACAGGCACACCTTCTGCAGCTGGCCTGCAGGCCTCGAACTCTGAGAAGCCCTCTCTCAAGCAAGCCAAAGCCTGCCCTGGGTCTACCCTGGGTGGAGGTGTCCACAACGGGGCCCAGGTGAAGGAGCCAGAAGAAAAGAAGTGCCAAATGCCAGTCCACTGTCAGGACAGCAGGGTAACTAAGACCATTTCACATCTGTATCAGGAAAGTATGTCTAAACAGCAGTCTCATATCAGCAGTGAAGCCCACAGGAGTCACCTCCCTTCAGCAAAACCAAAGCGATCATTCATAGAATCAAATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004177:ENSBTAT00000005473:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.890
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(20.0=47.1),PF134281=TPR_14=PU(31.8=41.2)
A:
NA
C2:
PF134281=TPR_14=PD(65.9=6.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTTTATGCCAGGGCGAGAG
R:
AGGTTTCGGATGTACGGGGAG
Band lengths:
358-968
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]